RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 DLGAP3O95886 979 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 PRLP01236 227 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 NELFEP18615 380 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 EPHB1P54762 984 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 RBM43Q6ZSC3 357 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CATIPQ7Z7H3 387 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CCDC124Q96CT7 223 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 DBF4Q9UBU7 674 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CES1P23141 567 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ATP5DP30049 168 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 OCA2Q04671 838 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CUL1Q13616 776 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 PRR23BQ6ZRT6 265 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 MTDHQ86UE4 582 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF333Q96JL9 665 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 KIAA1683Q9H0B3 1180 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 MRPL46Q9H2W6 279 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CIDEBQ9UHD4 219 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 NOP56O00567 594 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 SFR1Q86XK3 245 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 MAML3Q96JK9 1138 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CITED4Q96RK1 184 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CNNM2Q9H8M5 875 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ATP7BP35670 1465 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 NBPF26B4DH59 902 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 KRT2P35908 639 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 AKR1D1P51857 326 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 KIF23Q02241 960 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 NCOA7Q8NI08 942 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CCDC169A6NNP5 214 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 PFDN6O15212 129 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ZBED4O75132 1171 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TRMUO75648 421 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TMEM63BQ5T3F8 832 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ITPRIPL1Q6GPH6 555 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ATG14Q6ZNE5 492 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 RHOT2Q8IXI1 618 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 HAUS4Q9H6D7 363 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 MKL2Q9ULH7 1088 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 A0A0J9YVX5 310 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TLK2Q86UE8 772 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CDH24Q86UP0 819 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 SYT2Q8N9I0 419 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 FAM13CQ8NE31 585 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 GIPC2Q8TF65 315 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 FOXD2O60548 495 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 FBXO21O94952 628 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 PPARGP37231 505 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 RGS21Q2M5E4 152 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 EHMT1Q9H9B1 1298 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 SNX24Q9Y343 169 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 A8MX80 341 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TSPAN1O60635 241 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CROCCP3Q8IVE0 287 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF507Q8TCN5 953 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TRIM56Q9BRZ2 755 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 LACRTQ9GZZ8 138 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 LIN28AQ9H9Z2 209 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ABLIM1O14639 778 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 DUS1LQ6P1R4 473 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 SLC4A11Q8NBS3 891 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 RILPQ96NA2 401 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 INIPQ9NRY2 104 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 EPN2O95208 641 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ACSL3O95573 720 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 LONP1P36776 959 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 KRT81Q14533 505 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 SLC45A4Q5BKX6 768 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 VASH1Q7L8A9 365 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 PPP1R14CQ8TAE6 165 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 SLC26A7Q8TE54 656 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TSPAN4O14817 238 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 NEK3P51956 506 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 PDE4DQ08499 809 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 KHDC1Q4VXA5 237 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 STXBP4Q6ZWJ1 553 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 KCTD4Q8WVF5 259 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 RIOK1Q9BRS2 568 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 ADAM33Q9BZ11 813 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TTC7AQ9ULT0 858 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 NDC80O14777 642 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 MFN2O95140 757 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 SLC5A1P13866 664 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 IREB2P48200 963 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 BTG3Q14201 252 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TRAF7Q6Q0C0 670 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 GPATCH1Q9BRR8 931 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 STRNO43815 780 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 FAPQ12884 760 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 NCAPHQ15003 741 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 HABP4Q5JVS0 413 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CFLARO15519 480 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 TCP1P17987 556 aaKnown RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 MKRN4PQ13434 485 aaPredicted RBP3.63□□□□□ -1.83
SYNE1-212ENST00000423061 PDK3Q15120 406 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 CNGA3Q16281 694 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 AGBL2Q5U5Z8 902 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 EFCAB3Q8N7B9 438 aa3.63□□□□□ -1.83
SYNE1-212ENST00000423061 GIN1Q9NXP7 522 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms