RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PRDX5P30044 214 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 SDC4P31431 198 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 CLCN6P51797 869 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 FAM180AQ6UWF9 173 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 ST13P4Q8IZP2 240 aaPredicted RBP13.41□□□□□ -0.26
SDC3-201ENST00000336798 TMEM35BQ8NCS4 154 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 ASNSP08243 561 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 SPP2Q13103 211 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 KIF12Q96FN5 646 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 LBHD1Q9BQE6 289 aaPredicted RBP13.41□□□□□ -0.26
SDC3-201ENST00000336798 COA1Q9GZY4 146 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 PALMDQ9NP74 551 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.41□□□□□ -0.26
SDC3-201ENST00000336798 CTTNBP2Q8WZ74 1663 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 FAM135BQ49AJ0 1406 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 KPNA7A9QM74 516 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 AARSP49588 968 aaKnown RBP eCLIP13.41□□□□□ -0.26
SDC3-201ENST00000336798 FAM102AQ5T9C2 384 aaPredicted RBP13.41□□□□□ -0.26
SDC3-201ENST00000336798 LRRC8EQ6NSJ5 796 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 ZBED8Q8IZ13 594 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 SYNE4Q8N205 404 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 ZNF564Q8TBZ8 553 aaPredicted RBP13.41□□□□□ -0.26
SDC3-201ENST00000336798 OXER1Q8TDS5 423 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 RNF146Q9NTX7 359 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 HOXC10Q9NYD6 342 aa13.41□□□□□ -0.26
SDC3-201ENST00000336798 ZNF335Q9H4Z2 1342 aaPredicted RBP13.4□□□□□ -0.26
SDC3-201ENST00000336798 IPO5O00410 1097 aaKnown RBP13.4□□□□□ -0.26
SDC3-201ENST00000336798 LRRC63Q05C16 580 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 USP33Q8TEY7 942 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 SNX5Q9Y5X3 404 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 CTIFO43310 598 aaKnown RBP13.4□□□□□ -0.26
SDC3-201ENST00000336798 GPC5P78333 572 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 PDIA2Q13087 525 aaKnown RBP13.4□□□□□ -0.26
SDC3-201ENST00000336798 RRM2BQ7LG56 351 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 RHOT2Q8IXI1 618 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 ZNF212Q9UDV6 495 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 ERBB3P21860 1342 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 ESYT3A0FGR9 886 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 CTSHP09668 335 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 TMC4Q7Z404 712 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 ANKMY2Q8IV38 441 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 SH2D3AQ9BRG2 576 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 TMEM94Q12767 1356 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 WDR62O43379 1518 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 ZBTB5O15062 677 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 PRR29P0C7W0 189 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 CCDC157Q569K6 752 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 FOXP4Q8IVH2 680 aaPredicted RBP13.4□□□□□ -0.26
SDC3-201ENST00000336798 DCAF4Q8WV16 495 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 C1orf54Q8WWF1 131 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 RBM41Q96IZ5 413 aaKnown RBP13.4□□□□□ -0.26
SDC3-201ENST00000336798 ROR1Q01973 937 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 COASYQ13057 564 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 FSCBQ5H9T9 825 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 BTBD8Q5XKL5 378 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 CC2D1AQ6P1N0 951 aaPredicted RBP13.4□□□□□ -0.26
SDC3-201ENST00000336798 SRPK1Q96SB4 655 aaKnown RBP13.4□□□□□ -0.26
SDC3-201ENST00000336798 SMAD5Q99717 465 aaKnown RBP13.4□□□□□ -0.26
SDC3-201ENST00000336798 SATB2Q9UPW6 733 aa13.4□□□□□ -0.26
SDC3-201ENST00000336798 NPHP3-ACAD11A0A0J9YXS1 232 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 PJA2O43164 708 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 IFNAR1P17181 557 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 SMARCA1P28370 1054 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 VAMP7P51809 220 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 PTPN12Q05209 780 aaKnown RBP13.39□□□□□ -0.27
SDC3-201ENST00000336798 TMEM62Q0P6H9 643 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 ALCAMQ13740 583 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 TTLL4Q14679 1199 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 TBC1D9BQ66K14 1250 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 TMCO5AQ8N6Q1 288 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 XXYLT1Q8NBI6 393 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 AGAP3Q96P47 875 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 RUBCNLQ9H714 662 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 SPDYE5A6NIY4 337 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 PP2D1A8MPX8 630 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 PYGBP11216 843 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 LRRC74AQ0VAA2 488 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 SPDYE7PQ495Y7 208 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 CYB5R4Q7L1T6 521 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 TADA2BQ86TJ2 420 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 RAD54LQ92698 747 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 STX18Q9P2W9 335 aaKnown RBP13.39□□□□□ -0.27
SDC3-201ENST00000336798 FEM1BQ9UK73 627 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 MFAP3LO75121 409 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 KRT38O76015 456 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 CHRNA3P32297 505 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 ATXN3P54252 364 aaPredicted RBP13.39□□□□□ -0.27
SDC3-201ENST00000336798 MAGOHP61326 146 aaKnown RBP13.39□□□□□ -0.27
SDC3-201ENST00000336798 EFHC2Q5JST6 749 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 TJAP1Q5JTD0 557 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 ACAP3Q96P50 834 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 GPR108Q9NPR9 543 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 SEL1LQ9UBV2 794 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.39□□□□□ -0.27
SDC3-201ENST00000336798 ZC3H4Q9UPT8 1303 aaKnown RBP13.39□□□□□ -0.27
SDC3-201ENST00000336798 DCTN3O75935 186 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 KCNH2Q12809 1159 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 RESTQ13127 1097 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 ZNF235Q14590 738 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 NFRKBQ6P4R8 1299 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms