RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 SLC11A1P49279 550 aa14.24□□□□□ -0.13
CD44-203ENST00000278386 ANAPC15P60006 121 aa14.24□□□□□ -0.13
CD44-203ENST00000278386 SIGLEC14Q08ET2 396 aa14.24□□□□□ -0.13
CD44-203ENST00000278386 CALCRLQ16602 461 aa14.24□□□□□ -0.13
CD44-203ENST00000278386 PTPN21Q16825 1174 aa14.24□□□□□ -0.13
CD44-203ENST00000278386 EARS2Q5JPH6 523 aaKnown RBP14.24□□□□□ -0.13
CD44-203ENST00000278386 RARS2Q5T160 578 aaKnown RBP14.24□□□□□ -0.13
CD44-203ENST00000278386 DDX53Q86TM3 631 aaKnown RBP14.24□□□□□ -0.13
CD44-203ENST00000278386 TPH2Q8IWU9 490 aa14.24□□□□□ -0.13
CD44-203ENST00000278386 NECAB1Q8N987 351 aa14.24□□□□□ -0.13
CD44-203ENST00000278386 BCL7CQ8WUZ0 217 aaPredicted RBP14.24□□□□□ -0.13
CD44-203ENST00000278386 FAM193BQ96PV7 902 aaPredicted RBP14.24□□□□□ -0.13
CD44-203ENST00000278386 POMKQ9H5K3 350 aa14.24□□□□□ -0.13
CD44-203ENST00000278386 ZSWIM4Q9H7M6 989 aa14.24□□□□□ -0.13
CD44-203ENST00000278386 MINDY3Q9H8M7 445 aa14.24□□□□□ -0.13
CD44-203ENST00000278386 DZANK1Q9NVP4 752 aa14.24□□□□□ -0.13
CD44-203ENST00000278386 ZNF623O75123 536 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 LARGE1O95461 756 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 SSBP05455 408 aaKnown RBP eCLIP14.23□□□□□ -0.13
CD44-203ENST00000278386 GALTP07902 379 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 WEE2P0C1S8 567 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 CTSAP10619 480 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 ITIH3Q06033 890 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 SPIRE1Q08AE8 756 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 TRIM29Q14134 588 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 GIT2Q14161 759 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 AGMOQ6ZNB7 445 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 FERMT3Q86UX7 667 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 GTF3C6Q969F1 213 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 RIPOR3Q96MK2 946 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 NECTIN4Q96NY8 510 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 EIF2AK1Q9BQI3 630 aaKnown RBP14.23□□□□□ -0.13
CD44-203ENST00000278386 ADAM7Q9H2U9 754 aa14.23□□□□□ -0.13
CD44-203ENST00000278386 ZBTB39O15060 712 aa14.22□□□□□ -0.13
CD44-203ENST00000278386 ASAP2O43150 1006 aa14.22□□□□□ -0.13
CD44-203ENST00000278386 B4GALT3O60512 393 aa14.22□□□□□ -0.13
CD44-203ENST00000278386 EPCAMP16422 314 aa14.22□□□□□ -0.13
CD44-203ENST00000278386 MTHFRP42898 656 aa14.22□□□□□ -0.13
CD44-203ENST00000278386 TFDP1Q14186 410 aa14.22□□□□□ -0.13
CD44-203ENST00000278386 ME3Q16798 604 aa14.22□□□□□ -0.13
CD44-203ENST00000278386 BMP8AQ7Z5Y6 402 aa14.22□□□□□ -0.13
CD44-203ENST00000278386 ZNF280BQ86YH2 543 aa14.22□□□□□ -0.13
CD44-203ENST00000278386 C12orf76Q8N812 135 aaPredicted RBP14.22□□□□□ -0.13
CD44-203ENST00000278386 TDRD5Q8NAT2 981 aaKnown RBP14.22□□□□□ -0.13
CD44-203ENST00000278386 ZDBF2Q9HCK1 2354 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 C2CD4DB7Z1M9 353 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 INO80B-WBP1J3KQ70 363 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 NEMFO60524 1076 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 POMCP01189 267 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 ITGA4P13612 1032 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 FDPSP14324 419 aaKnown RBP14.21□□□□□ -0.13
CD44-203ENST00000278386 MRE11P49959 708 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 MXD4Q14582 209 aaPredicted RBP14.21□□□□□ -0.13
CD44-203ENST00000278386 PTPN14Q15678 1187 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 UBXN11Q5T124 520 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 KIAA1841Q6NSI8 718 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 NOTUMQ6P988 496 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 CABP7Q86V35 215 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 DIS3L2Q8IYB7 885 aaKnown RBP14.21□□□□□ -0.13
CD44-203ENST00000278386 FBXL6Q8N531 539 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 NSUN7Q8NE18 718 aaKnown RBP14.21□□□□□ -0.13
CD44-203ENST00000278386 TNFRSF25Q93038 417 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 CPB2Q96IY4 423 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 APOL6Q9BWW8 343 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 EMILIN2Q9BXX0 1053 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 TRIM6Q9C030 488 aaPredicted RBP14.21□□□□□ -0.13
CD44-203ENST00000278386 XPNPEP1Q9NQW7 623 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 KANSL3Q9P2N6 904 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 DBR1Q9UK59 544 aaKnown RBP14.21□□□□□ -0.13
CD44-203ENST00000278386 PCDHA12Q9UN75 941 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 PRG3Q9Y2Y8 225 aaPredicted RBP14.21□□□□□ -0.13
CD44-203ENST00000278386 IRAK3Q9Y616 596 aa14.21□□□□□ -0.13
CD44-203ENST00000278386 MTCL1Q9Y4B5 1905 aaKnown RBP14.2□□□□□ -0.14
CD44-203ENST00000278386 TSPAN1O60635 241 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 JAK2O60674 1132 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 DDHD2O94830 711 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 SLITRK3O94933 977 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 URODP06132 367 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 NCLP19338 710 aaKnown RBP14.2□□□□□ -0.14
CD44-203ENST00000278386 AXLP30530 894 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 HOXA11P31270 313 aaPredicted RBP14.2□□□□□ -0.14
CD44-203ENST00000278386 MLH1P40692 756 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 OR1G1P47890 313 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 AFF1P51825 1210 aaKnown RBP14.2□□□□□ -0.14
CD44-203ENST00000278386 NCBP1Q09161 790 aaKnown RBP14.2□□□□□ -0.14
CD44-203ENST00000278386 MTMR3Q13615 1198 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 MRPL10Q7Z7H8 261 aaKnown RBP14.2□□□□□ -0.14
CD44-203ENST00000278386 PPFIBP1Q86W92 1011 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 KREMEN2Q8NCW0 462 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 CNNM3Q8NE01 707 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 PRSS33Q8NF86 280 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 TMEM175Q9BSA9 504 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 VN1R3Q9BXE9 311 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 EIF2AQ9BY44 585 aaKnown RBP14.2□□□□□ -0.14
CD44-203ENST00000278386 TTC12Q9H892 705 aaPredicted RBP14.2□□□□□ -0.14
CD44-203ENST00000278386 SFXN1Q9H9B4 322 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 STK39Q9UEW8 545 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 FAN1Q9Y2M0 1017 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 IPPQ9Y573 584 aa14.2□□□□□ -0.14
CD44-203ENST00000278386 POTEMA6NI47 508 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms