RNA–Protein interactions for RNA: YPL010W

RET3, Transcript of Zeta subunit of the coatomer complex (COPI), yeast

Gene RET3, Length 570 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RET3	YPL010W	YKL187C	P34231	750 aa		3.53	□□□□□ -1.84
RET3	YPL010W	FRE2	P36033	711 aa		3.53	□□□□□ -1.84
RET3	YPL010W	CHK1	P38147	527 aa		3.53	□□□□□ -1.84
RET3	YPL010W	SMK1	P41808	388 aa		3.53	□□□□□ -1.84
RET3	YPL010W	IDP2	P41939	412 aa		3.53	□□□□□ -1.84
RET3	YPL010W	MRPL19	P53875	158 aa		3.53	□□□□□ -1.84
RET3	YPL010W	YNL010W	P53981	241 aa	Known RBP	3.53	□□□□□ -1.84
RET3	YPL010W	RPL15B	P54780	204 aa	Predicted RBP	3.53	□□□□□ -1.84
RET3	YPL010W	TVP15	Q03860	143 aa		3.53	□□□□□ -1.84
RET3	YPL010W	SNX41	Q04053	625 aa		3.53	□□□□□ -1.84
RET3	YPL010W	ATG38	Q05789	226 aa	Known RBP	3.53	□□□□□ -1.84
RET3	YPL010W	SSQ1	Q05931	657 aa	Predicted RBP	3.53	□□□□□ -1.84
RET3	YPL010W	CCW14	O13547	238 aa		3.52	□□□□□ -1.85
RET3	YPL010W	RPL15A	P05748	204 aa	Known RBP	3.52	□□□□□ -1.85
RET3	YPL010W	MRP13	P12686	339 aa		3.52	□□□□□ -1.85
RET3	YPL010W	UNG1	P12887	359 aa		3.52	□□□□□ -1.85
RET3	YPL010W	CTA1	P15202	515 aa		3.52	□□□□□ -1.85
RET3	YPL010W	MDH2	P22133	377 aa		3.52	□□□□□ -1.85
RET3	YPL010W	CYS4	P32582	507 aa	Known RBP	3.52	□□□□□ -1.85
RET3	YPL010W	SEC17	P32602	292 aa		3.52	□□□□□ -1.85
RET3	YPL010W	YBR220C	P38318	560 aa		3.52	□□□□□ -1.85
RET3	YPL010W	STP2	P38704	541 aa		3.52	□□□□□ -1.85
RET3	YPL010W	YHR177W	P38867	453 aa		3.52	□□□□□ -1.85
RET3	YPL010W	FET3	P38993	636 aa		3.52	□□□□□ -1.85
RET3	YPL010W	COG3	P40094	801 aa		3.52	□□□□□ -1.85
RET3	YPL010W	GPP2	P40106	250 aa	Known RBP	3.52	□□□□□ -1.85
RET3	YPL010W	NIT2	P47016	307 aa		3.52	□□□□□ -1.85
RET3	YPL010W	YNR068C	P53754	272 aa		3.52	□□□□□ -1.85
RET3	YPL010W	INP1	Q03694	420 aa		3.52	□□□□□ -1.85
RET3	YPL010W	EKI1	Q03764	534 aa		3.52	□□□□□ -1.85
RET3	YPL010W	NAT4	Q04751	285 aa		3.52	□□□□□ -1.85
RET3	YPL010W	COX20	Q04935	205 aa		3.52	□□□□□ -1.85
RET3	YPL010W	STE23	Q06010	1027 aa		3.52	□□□□□ -1.85
RET3	YPL010W	TMC1	Q08422	150 aa	Predicted RBP	3.52	□□□□□ -1.85
RET3	YPL010W	SGT1	Q08446	395 aa		3.52	□□□□□ -1.85
RET3	YPL010W	RDL2	Q08742	149 aa	Known RBP	3.52	□□□□□ -1.85
RET3	YPL010W	GRE1	Q08969	168 aa		3.52	□□□□□ -1.85
RET3	YPL010W	BSC1	Q12140	328 aa		3.52	□□□□□ -1.85
RET3	YPL010W	YDL180W	Q12301	547 aa		3.52	□□□□□ -1.85
RET3	YPL010W	SAS5	Q99314	248 aa		3.52	□□□□□ -1.85
RET3	YPL010W	RHO1	P06780	209 aa	Known RBP	3.51	□□□□□ -1.85
RET3	YPL010W	RPL35A	P0CX84	120 aa	Known RBP	3.51	□□□□□ -1.85
RET3	YPL010W	RPL35B	P0CX85	120 aa	Known RBP	3.51	□□□□□ -1.85
RET3	YPL010W	TFS1	P14306	219 aa		3.51	□□□□□ -1.85
RET3	YPL010W	ITR1	P30605	584 aa		3.51	□□□□□ -1.85
RET3	YPL010W	VPS41	P38959	992 aa		3.51	□□□□□ -1.85
RET3	YPL010W	FAA2	P39518	744 aa		3.51	□□□□□ -1.85
RET3	YPL010W	YIL012W	P40551	113 aa		3.51	□□□□□ -1.85
RET3	YPL010W	GAB1	P41733	394 aa		3.51	□□□□□ -1.85
RET3	YPL010W	PTR3	P43606	678 aa		3.51	□□□□□ -1.85
RET3	YPL010W	DCP2	P53550	970 aa	Known RBP	3.51	□□□□□ -1.85
RET3	YPL010W	CUS2	P53830	285 aa	Predicted RBP	3.51	□□□□□ -1.85
RET3	YPL010W	REX2	P54964	269 aa	Known RBP	3.51	□□□□□ -1.85
RET3	YPL010W	YMR010W	Q03687	405 aa		3.51	□□□□□ -1.85
RET3	YPL010W	MCP1	Q12106	302 aa		3.51	□□□□□ -1.85
RET3	YPL010W	MHF1	Q3E835	90 aa		3.51	□□□□□ -1.85
RET3	YPL010W	ATP2	P00830	511 aa	Known RBP	3.5	□□□□□ -1.85
RET3	YPL010W	DBP3	P20447	523 aa	Known RBP	3.5	□□□□□ -1.85
RET3	YPL010W	RPB9	P27999	122 aa		3.5	□□□□□ -1.85
RET3	YPL010W	HIR2	P32480	875 aa		3.5	□□□□□ -1.85
RET3	YPL010W	YBL029W	P38201	376 aa		3.5	□□□□□ -1.85
RET3	YPL010W	MTC4	P38335	694 aa	Known RBP	3.5	□□□□□ -1.85
RET3	YPL010W	IMD2	P38697	523 aa	Known RBP	3.5	□□□□□ -1.85
RET3	YPL010W	PFK26	P40433	827 aa	Known RBP	3.5	□□□□□ -1.85
RET3	YPL010W	YFL051C	P43552	160 aa		3.5	□□□□□ -1.85
RET3	YPL010W	ABM1	P47146	123 aa		3.5	□□□□□ -1.85
RET3	YPL010W	YJR142W	P47173	342 aa		3.5	□□□□□ -1.85
RET3	YPL010W	IMD3	P50095	523 aa	Known RBP	3.5	□□□□□ -1.85
RET3	YPL010W	SBH2	P52871	88 aa		3.5	□□□□□ -1.85
RET3	YPL010W	PCP1	P53259	346 aa		3.5	□□□□□ -1.85
RET3	YPL010W	COG2	P53271	262 aa		3.5	□□□□□ -1.85
RET3	YPL010W	API2	Q04413	109 aa		3.5	□□□□□ -1.85
RET3	YPL010W	YKU80	Q04437	629 aa		3.5	□□□□□ -1.85
RET3	YPL010W	YHC1	Q05900	231 aa	Known RBP	3.5	□□□□□ -1.85
RET3	YPL010W	UTP21	Q06078	939 aa	Predicted RBP	3.5	□□□□□ -1.85
RET3	YPL010W	YLR413W	Q06689	675 aa		3.5	□□□□□ -1.85
RET3	YPL010W	YOR378W	Q08902	515 aa		3.5	□□□□□ -1.85
RET3	YPL010W	SLF1	Q12034	447 aa	Known RBP	3.5	□□□□□ -1.85
RET3	YPL010W	ATX2	Q12067	313 aa		3.5	□□□□□ -1.85
RET3	YPL010W	YDL109C	Q12103	647 aa		3.5	□□□□□ -1.85
RET3	YPL010W	LYS21	Q12122	440 aa	Known RBP	3.5	□□□□□ -1.85
RET3	YPL010W	SNF8	Q12483	233 aa		3.5	□□□□□ -1.85
RET3	YPL010W	YAL064W-B	O13512	126 aa		3.49	□□□□□ -1.85
RET3	YPL010W	CAR1	P00812	333 aa	Known RBP	3.49	□□□□□ -1.85
RET3	YPL010W	CLB3	P24870	427 aa		3.49	□□□□□ -1.85
RET3	YPL010W	DEP1	P31385	405 aa		3.49	□□□□□ -1.85
RET3	YPL010W	SLC1	P33333	303 aa		3.49	□□□□□ -1.85
RET3	YPL010W	ZTA1	P38230	334 aa	Known RBP	3.49	□□□□□ -1.85
RET3	YPL010W	ARN1	P38731	627 aa		3.49	□□□□□ -1.85
RET3	YPL010W	MTC6	P38849	526 aa		3.49	□□□□□ -1.85
RET3	YPL010W	YHR180W	P38868	163 aa		3.49	□□□□□ -1.85
RET3	YPL010W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	3.49	□□□□□ -1.85	not detected
RET3	YPL010W	YER188W	P40103	239 aa		3.49	□□□□□ -1.85
RET3	YPL010W	RFC4	P40339	323 aa	Known RBP	3.49	□□□□□ -1.85
RET3	YPL010W	YFR054C	P43622	192 aa		3.49	□□□□□ -1.85
RET3	YPL010W	LYS20	P48570	428 aa	Known RBP	3.49	□□□□□ -1.85
RET3	YPL010W	COS6	P53344	381 aa		3.49	□□□□□ -1.85
RET3	YPL010W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	3.49	□□□□□ -1.85	not detected
RET3	YPL010W	RPL6A	Q02326	176 aa	Known RBP	3.49	□□□□□ -1.85
RET3	YPL010W	MMT1	Q03218	510 aa		3.49	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 20.1 ms