RNA–Protein interactions for RNA: YOR106W

VAM3, Transcript of Syntaxin-like vacuolar t-SNARE, yeastyeast

Gene VAM3, Length 852 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM3YOR106W SHE4P51534 789 aa2.85□□□□□ -1.95
VAM3YOR106W YGL088WP53151 121 aa2.85□□□□□ -1.95
VAM3YOR106W YDR222WQ04925 415 aa2.85□□□□□ -1.95
VAM3YOR106W YPL264CQ08980 353 aa2.85□□□□□ -1.95
VAM3YOR106W SPO24Q3E752 67 aa2.85□□□□□ -1.95
VAM3YOR106W CUE3P53137 624 aaKnown RBP2.84□□□□□ -1.95
VAM3YOR106W YPL113CQ02961 396 aa2.84□□□□□ -1.95
VAM3YOR106W YDR114CQ04597 100 aa2.84□□□□□ -1.95
VAM3YOR106W RLP24Q07915 199 aaKnown RBP2.84□□□□□ -1.95
VAM3YOR106W MIM1Q08176 113 aa2.84□□□□□ -1.95
VAM3YOR106W SGT2Q12118 346 aaKnown RBP2.84□□□□□ -1.95
VAM3YOR106W YPL245WQ12179 454 aaKnown RBP2.84□□□□□ -1.95
VAM3YOR106W MIG1P27705 504 aa2.83□□□□□ -1.96
VAM3YOR106W CSE1P33307 960 aa2.83□□□□□ -1.96
VAM3YOR106W MED8P38304 223 aa2.83□□□□□ -1.96
VAM3YOR106W HSH155P49955 971 aaKnown RBP2.83□□□□□ -1.96
VAM3YOR106W TAF6P53040 516 aa2.83□□□□□ -1.96
VAM3YOR106W YGL114WP53134 725 aa2.83□□□□□ -1.96
VAM3YOR106W PXR1P53335 271 aaPredicted RBP2.83□□□□□ -1.96
VAM3YOR106W RDL2Q08742 149 aaKnown RBP2.83□□□□□ -1.96
VAM3YOR106W DAL81P21657 970 aa2.82□□□□□ -1.96
VAM3YOR106W ARO4P32449 370 aaKnown RBP2.82□□□□□ -1.96
VAM3YOR106W SMC2P38989 1170 aaKnown RBP2.82□□□□□ -1.96
VAM3YOR106W SCC4P40090 624 aa2.82□□□□□ -1.96
VAM3YOR106W ECO1P43605 281 aa2.82□□□□□ -1.96
VAM3YOR106W IES3Q12345 250 aa2.82□□□□□ -1.96
VAM3YOR106W CBP2P03874 630 aaPredicted RBP2.81□□□□□ -1.96
VAM3YOR106W TAL1P15019 335 aaKnown RBP2.81□□□□□ -1.96
VAM3YOR106W VMA5P31412 392 aaKnown RBP2.81□□□□□ -1.96
VAM3YOR106W BUD2P33314 1104 aa2.81□□□□□ -1.96
VAM3YOR106W BUR2Q05949 395 aa2.81□□□□□ -1.96
VAM3YOR106W DXO1Q06349 442 aa2.81□□□□□ -1.96
VAM3YOR106W NFI1Q12216 726 aa2.81□□□□□ -1.96
VAM3YOR106W MET2P08465 486 aa2.8□□□□□ -1.96
VAM3YOR106W ACB1P31787 87 aa2.8□□□□□ -1.96
VAM3YOR106W YFR045WP43617 309 aa2.8□□□□□ -1.96
VAM3YOR106W YGR016WP53209 190 aa2.8□□□□□ -1.96
VAM3YOR106W RVB1Q03940 463 aaKnown RBP2.8□□□□□ -1.96
VAM3YOR106W ERP3Q12403 225 aa2.8□□□□□ -1.96
VAM3YOR106W EDC2P40023 145 aaPredicted RBP2.79□□□□□ -1.96
VAM3YOR106W FYV8P46949 817 aaKnown RBP2.79□□□□□ -1.96
VAM3YOR106W YNR066CP53752 436 aa2.79□□□□□ -1.96
VAM3YOR106W YNL040WP53960 456 aaPredicted RBP2.79□□□□□ -1.96
VAM3YOR106W YPL080CQ02826 108 aa2.79□□□□□ -1.96
VAM3YOR106W ERD1P16151 362 aa2.78□□□□□ -1.96
VAM3YOR106W POT1P27796 417 aaKnown RBP RIP-Chip data2.78□□□□□ -1.96not detected
VAM3YOR106W SUR1P33300 382 aa2.78□□□□□ -1.96
VAM3YOR106W YKR032WP36127 104 aa2.78□□□□□ -1.96
VAM3YOR106W SIF2P38262 535 aa2.78□□□□□ -1.96
VAM3YOR106W YIL089WP40500 205 aa2.78□□□□□ -1.96
VAM3YOR106W YLR012CQ07927 99 aa2.78□□□□□ -1.96
VAM3YOR106W VIK1Q12045 647 aa2.78□□□□□ -1.96
VAM3YOR106W YDR262WQ12331 272 aa2.78□□□□□ -1.96
VAM3YOR106W PET8P38921 284 aa2.77□□□□□ -1.97
VAM3YOR106W ACT1P60010 375 aaKnown RBP2.77□□□□□ -1.97
VAM3YOR106W MIX17Q03667 156 aa2.77□□□□□ -1.97
VAM3YOR106W MRX4Q12467 430 aa2.77□□□□□ -1.97
VAM3YOR106W PML1Q07930 204 aaPredicted RBP2.76□□□□□ -1.97
VAM3YOR106W YGR168CP53293 376 aa2.75□□□□□ -1.97
VAM3YOR106W PDR16P53860 351 aaKnown RBP2.75□□□□□ -1.97
VAM3YOR106W CLP1Q08685 445 aaPredicted RBP2.75□□□□□ -1.97
VAM3YOR106W RNR2P09938 399 aaKnown RBP2.74□□□□□ -1.97
VAM3YOR106W KRE1P17260 313 aa2.74□□□□□ -1.97
VAM3YOR106W IRC4Q03036 179 aa2.74□□□□□ -1.97
VAM3YOR106W UBX2Q04228 584 aa2.74□□□□□ -1.97
VAM3YOR106W TDH2P00358 332 aaKnown RBP2.73□□□□□ -1.97
VAM3YOR106W TDH3P00359 332 aaKnown RBP RIP-Chip data2.73□□□□□ -1.97not detected
VAM3YOR106W RSA4P25382 515 aaKnown RBP2.73□□□□□ -1.97
VAM3YOR106W AIM29P36154 155 aa2.73□□□□□ -1.97
VAM3YOR106W PES4P39684 611 aa2.73□□□□□ -1.97
VAM3YOR106W SEC13Q04491 297 aaKnown RBP2.73□□□□□ -1.97
VAM3YOR106W ARC18Q05933 178 aaKnown RBP2.73□□□□□ -1.97
VAM3YOR106W CDD1Q06549 142 aa2.73□□□□□ -1.97
VAM3YOR106W YOR292CQ08743 309 aa2.73□□□□□ -1.97
VAM3YOR106W CDC42P19073 191 aa2.72□□□□□ -1.97
VAM3YOR106W VPH2P32341 215 aa2.72□□□□□ -1.97
VAM3YOR106W YEL043WP32618 956 aa2.72□□□□□ -1.97
VAM3YOR106W MRPL6P32904 214 aa2.72□□□□□ -1.97
VAM3YOR106W UFD1P53044 361 aa2.72□□□□□ -1.97
VAM3YOR106W RGM1Q00453 211 aa2.72□□□□□ -1.97
VAM3YOR106W YOL163WP0CF20 169 aa2.71□□□□□ -1.98
VAM3YOR106W YAK1P14680 807 aa2.71□□□□□ -1.98
VAM3YOR106W VPS1P21576 704 aaKnown RBP2.71□□□□□ -1.98
VAM3YOR106W SOP4P39543 234 aaPredicted RBP2.71□□□□□ -1.98
VAM3YOR106W PEX30Q06169 523 aa2.71□□□□□ -1.98
VAM3YOR106W FEX1Q08913 375 aa2.71□□□□□ -1.98
VAM3YOR106W FEX2Q08991 375 aa2.71□□□□□ -1.98
VAM3YOR106W PSY3Q12318 242 aa2.71□□□□□ -1.98
VAM3YOR106W LAG2Q92325 660 aa2.71□□□□□ -1.98
VAM3YOR106W PRE7P23724 241 aaKnown RBP2.7□□□□□ -1.98
VAM3YOR106W APE4P38821 490 aa2.7□□□□□ -1.98
VAM3YOR106W LIN1P38852 340 aaPredicted RBP2.7□□□□□ -1.98
VAM3YOR106W SNX41Q04053 625 aa2.7□□□□□ -1.98
VAM3YOR106W UTP23Q12339 254 aaKnown RBP2.7□□□□□ -1.98
VAM3YOR106W SMI1P32566 505 aa2.69□□□□□ -1.98
VAM3YOR106W ZRT1P32804 376 aa2.69□□□□□ -1.98
VAM3YOR106W ATG12P38316 186 aa2.69□□□□□ -1.98
VAM3YOR106W YHR035WP38769 630 aa2.69□□□□□ -1.98
VAM3YOR106W YER084WP40057 128 aa2.69□□□□□ -1.98
VAM3YOR106W RPL18AP0CX49 186 aaKnown RBP2.68□□□□□ -1.98
Retrieved 100 of 5,963 RNA–protein pairs in 51.6 ms