RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	SBE22	P38814	852 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	MNN9	P39107	395 aa	Known RBP	4.18	□□□□□ -1.74
CAF16	YFL028C	RTT105	P40063	208 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	YIL029C	P40538	142 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	IDP2	P41939	412 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	YJR079W	P47126	109 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	ABM1	P47146	123 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	COS1	P53822	381 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	YMR317W	Q04893	1140 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	MSC3	Q05812	728 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	ESA1	Q08649	445 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	YDR018C	Q12185	396 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	YCL021W-A	Q96VH3	125 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	TOR2	P32600	2474 aa	Known RBP	4.17	□□□□□ -1.74
CAF16	YFL028C	HIS1	P00498	297 aa	Known RBP	4.17	□□□□□ -1.74
CAF16	YFL028C	REV1	P12689	985 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	DPH5	P32469	300 aa	Predicted RBP	4.17	□□□□□ -1.74
CAF16	YFL028C	PPQ1	P32945	549 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	SGE1	P33335	543 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	TIR2	P33890	251 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	RTC2	P38279	296 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	MMS21	P38632	267 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	MED6	P38782	295 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	EDC3	P39998	551 aa	Known RBP	4.17	□□□□□ -1.74
CAF16	YFL028C	PRM5	P40476	318 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	RPC17	P47076	161 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	MRM2	P53123	320 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	RTN1	Q04947	295 aa	Known RBP	4.17	□□□□□ -1.74
CAF16	YFL028C	MRPL35	Q06678	367 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	MDM36	Q06820	579 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	YCR024C-B	Q3E7Z8	88 aa		4.17	□□□□□ -1.74
CAF16	YFL028C	CYC3	P06182	269 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	RPS14A	P06367	137 aa	Known RBP	4.16	□□□□□ -1.74
CAF16	YFL028C	GAL7	P08431	366 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	MXR2	P25566	168 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	CIN8	P27895	1000 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	ZUO1	P32527	433 aa	Known RBP	4.16	□□□□□ -1.74
CAF16	YFL028C	GCG1	P32656	232 aa	Known RBP	4.16	□□□□□ -1.74
CAF16	YFL028C	VAM7	P32912	316 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	YHK8	P38776	514 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	AIM18	P38884	321 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	RPS14B	P39516	138 aa	Known RBP	4.16	□□□□□ -1.74
CAF16	YFL028C	YEL028W	P39989	153 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	YMR134W	P40207	237 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	SEC27	P41811	889 aa	Known RBP	4.16	□□□□□ -1.74
CAF16	YFL028C	LCB3	P47013	409 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	PRP24	P49960	444 aa	Known RBP	4.16	□□□□□ -1.74
CAF16	YFL028C	MAL13	P53338	473 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	CAB5	Q03941	241 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	NAT4	Q04751	285 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	GRX8	Q05926	109 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	GAT3	Q07928	141 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	NDD1	Q08887	554 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	RGS2	Q99188	309 aa		4.16	□□□□□ -1.74
CAF16	YFL028C	YPS1	P32329	569 aa		4.15	□□□□□ -1.75
CAF16	YFL028C	RIB7	P33312	244 aa		4.15	□□□□□ -1.75
CAF16	YFL028C	HEM14	P40012	539 aa		4.15	□□□□□ -1.75
CAF16	YFL028C	ERG10	P41338	398 aa	Known RBP	4.15	□□□□□ -1.75
CAF16	YFL028C	INP2	Q03824	705 aa		4.15	□□□□□ -1.75
CAF16	YFL028C	BUR2	Q05949	395 aa		4.15	□□□□□ -1.75
CAF16	YFL028C	SWC7	Q06707	132 aa		4.15	□□□□□ -1.75
CAF16	YFL028C	YDR262W	Q12331	272 aa		4.15	□□□□□ -1.75
CAF16	YFL028C	EAF3	Q12432	401 aa		4.15	□□□□□ -1.75
CAF16	YFL028C	EFG1	Q3E705	233 aa	Known RBP	4.15	□□□□□ -1.75
CAF16	YFL028C	RAD5	P32849	1169 aa	Predicted RBP	4.14	□□□□□ -1.75
CAF16	YFL028C	MRPS5	P33759	307 aa		4.14	□□□□□ -1.75
CAF16	YFL028C	FMP46	P36141	133 aa	Known RBP	4.14	□□□□□ -1.75
CAF16	YFL028C	ATG7	P38862	630 aa		4.14	□□□□□ -1.75
CAF16	YFL028C	CCT4	P39078	528 aa	Known RBP	4.14	□□□□□ -1.75
CAF16	YFL028C	YAT2	P40017	923 aa		4.14	□□□□□ -1.75
CAF16	YFL028C	YNL320W	P42840	284 aa		4.14	□□□□□ -1.75
CAF16	YFL028C	TRF5	P48561	642 aa	Known RBP	4.14	□□□□□ -1.75
CAF16	YFL028C	VEL1	P53058	206 aa		4.14	□□□□□ -1.75
CAF16	YFL028C	MTM1	P53320	366 aa		4.14	□□□□□ -1.75
CAF16	YFL028C	VPS60	Q03390	229 aa		4.14	□□□□□ -1.75
CAF16	YFL028C	YLR012C	Q07927	99 aa		4.14	□□□□□ -1.75
CAF16	YFL028C	APC2	Q12440	853 aa		4.14	□□□□□ -1.75
CAF16	YFL028C	OCA6	Q12454	224 aa		4.14	□□□□□ -1.75
CAF16	YFL028C	YER078W-A	Q3E7A2	54 aa		4.14	□□□□□ -1.75
CAF16	YFL028C	YBR298C-A	Q8TGK4	73 aa		4.14	□□□□□ -1.75
CAF16	YFL028C	UBR1	P19812	1950 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	COX5A	P00424	153 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	PIS1	P06197	220 aa	Known RBP	4.13	□□□□□ -1.75
CAF16	YFL028C	NAM2	P11325	894 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	ARF2	P19146	181 aa	Known RBP	4.13	□□□□□ -1.75
CAF16	YFL028C	KAR9	P32526	644 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	POP4	P38336	279 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	YHR182W	P38870	785 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	RIB4	P50861	169 aa	Predicted RBP	4.13	□□□□□ -1.75
CAF16	YFL028C	YGL260W	P53056	76 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	IMP4	P53941	290 aa	Known RBP	4.13	□□□□□ -1.75
CAF16	YFL028C	RPL22B	P56628	122 aa	Known RBP	4.13	□□□□□ -1.75
CAF16	YFL028C	YMR102C	Q03177	834 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	PIR1	Q03178	341 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	RTT103	Q05543	409 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	PBA1	Q05778	276 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	YLR413W	Q06689	675 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	LOT6	Q07923	191 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	YLR046C	Q12253	270 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	MRPL23	Q12487	163 aa	Predicted RBP	4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 310 ms