RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	YAL037W	P39728	267 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	VPS52	P39904	641 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	MEP1	P40260	492 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	PAC11	P40960	533 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	GCD10	P41814	478 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	AGP3	P43548	558 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	TIS11	P47977	285 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	SHE4	P51534	789 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	YIP1	P53039	248 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	YNL143C	P53908	130 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	PIR1	Q03178	341 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	TRM12	Q04235	462 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	YMR087W	Q04299	284 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	YMR111C	Q04461	462 aa	Predicted RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	YLR281C	Q05863	155 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	YPR114W	Q06107	315 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	SLF1	Q12034	447 aa	Known RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	YKL018C-A	Q3E7A7	99 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	BCY1	P07278	416 aa	Known RBP	3.53	□□□□□ -1.84
UBX5	YDR330W	NFT1	P0CE68	1218 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	SNF4	P12904	322 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	MSS116	P15424	664 aa	Known RBP	3.53	□□□□□ -1.84
UBX5	YDR330W	COX13	P32799	129 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	SKG1	P36169	355 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	YCR041W	P37265	110 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	YBR241C	P38142	488 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	INM1	P38710	295 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	GPI16	P38875	610 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	FAA2	P39518	744 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	HEM14	P40012	539 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	YER034W	P40022	185 aa	Known RBP	3.53	□□□□□ -1.84
UBX5	YDR330W	YER079W	P40052	210 aa	Known RBP	3.53	□□□□□ -1.84
UBX5	YDR330W	YPS6	P40583	537 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	AIM23	P47015	356 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	YPT32	P51996	222 aa	Known RBP	3.53	□□□□□ -1.84
UBX5	YDR330W	YNR068C	P53754	272 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	PRM1	P53835	661 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	GPI15	P53961	229 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	MMT1	Q03218	510 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	YDR124W	Q04608	324 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	IPK1	Q06667	281 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	YOR342C	Q12182	319 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	JLP1	Q12358	412 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	YOR338W	Q99326	363 aa		3.53	□□□□□ -1.84
UBX5	YDR330W	ILV5	P06168	395 aa	Known RBP	3.52	□□□□□ -1.85
UBX5	YDR330W	DST1	P07273	309 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	CTR86	P25355	563 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	YCR100C	P25606	316 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	CRM1	P30822	1084 aa	Known RBP	3.52	□□□□□ -1.85
UBX5	YDR330W	ZUO1	P32527	433 aa	Known RBP	3.52	□□□□□ -1.85
UBX5	YDR330W	PRP18	P33411	251 aa	Predicted RBP	3.52	□□□□□ -1.85
UBX5	YDR330W	TIP20	P33891	701 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	MRPL17	P36528	281 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	QDR3	P38227	689 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	RRF1	P38771	230 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	YHR218W	P38899	603 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	LYS1	P38998	373 aa	RIP-Chip data	3.52	□□□□□ -1.85	RIP-Chip
UBX5	YDR330W	TIM17	P39515	158 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	RPH1	P39956	796 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	AYR1	P40471	297 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	RMR1	P53060	241 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	FRE4	P53746	719 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	YNL095C	P53932	642 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	VAC7	P53950	1165 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	ECM11	Q04110	302 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	ATG17	Q06410	417 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	RTC5	Q12108	567 aa	Known RBP	3.52	□□□□□ -1.85
UBX5	YDR330W	YOR012W	Q12351	137 aa		3.52	□□□□□ -1.85
UBX5	YDR330W	THP2	O13539	261 aa	Known RBP	3.51	□□□□□ -1.85
UBX5	YDR330W	YPT1	P01123	206 aa	Known RBP	3.51	□□□□□ -1.85
UBX5	YDR330W	CBP2	P03874	630 aa	Predicted RBP	3.51	□□□□□ -1.85
UBX5	YDR330W	REV1	P12689	985 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	CMK2	P22517	447 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	PEX34	P25584	144 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	SPS19	P32573	292 aa	Known RBP	3.51	□□□□□ -1.85
UBX5	YDR330W	TRS65	P32893	560 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	RPT5	P33297	434 aa	Known RBP	3.51	□□□□□ -1.85
UBX5	YDR330W	GLG2	P47011	380 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	GWT1	P47026	490 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	EFM3	P47163	339 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	SSN8	P47821	323 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	GTO1	P48239	356 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	KEL2	P50090	882 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	ODC1	Q03028	310 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	YMR226C	Q05016	267 aa	Known RBP	3.51	□□□□□ -1.85
UBX5	YDR330W	YHC1	Q05900	231 aa	Known RBP	3.51	□□□□□ -1.85
UBX5	YDR330W	SKI7	Q08491	747 aa	Predicted RBP	3.51	□□□□□ -1.85
UBX5	YDR330W	CLP1	Q08685	445 aa	Predicted RBP	3.51	□□□□□ -1.85
UBX5	YDR330W	PER33	Q12144	273 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	GTT2	Q12390	233 aa		3.51	□□□□□ -1.85
UBX5	YDR330W	YFL068W	P0CX99	160 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	YLL066W-A	P0CY00	160 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	YLL067W-A	P0CY01	160 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	LSB5	P25369	354 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	3.5	□□□□□ -1.85	not detected
UBX5	YDR330W	SDH3	P33421	198 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	YPT52	P36018	234 aa	Known RBP	3.5	□□□□□ -1.85
UBX5	YDR330W	BMT2	P38278	337 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	RGI1	P40043	161 aa	Predicted RBP	3.5	□□□□□ -1.85
UBX5	YDR330W	GAB1	P41733	394 aa		3.5	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms