RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 PAN2Q504Q3 1202 aaKnown RBP18.66■□□□□ 0.58
TRIM28-215ENST00000601150 ZBTB8OSQ8IWT0 167 aa18.66■□□□□ 0.58
TRIM28-215ENST00000601150 RASSF8Q8NHQ8 419 aa18.66■□□□□ 0.58
TRIM28-215ENST00000601150 RUSC1Q9BVN2 902 aa18.66■□□□□ 0.58
TRIM28-215ENST00000601150 CHD7Q9P2D1 2997 aa18.66■□□□□ 0.58
TRIM28-215ENST00000601150 HOXA2O43364 376 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 EOMESO95936 686 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 SSBP05455 408 aaKnown RBP eCLIP18.65■□□□□ 0.58
TRIM28-215ENST00000601150 FGFR1P11362 822 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 IGFBP4P22692 258 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 AXLP30530 894 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 NAMPTP43490 491 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 GATMP50440 423 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 RAB27AP51159 221 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 NCBP1Q09161 790 aaKnown RBP18.65■□□□□ 0.58
TRIM28-215ENST00000601150 PKP1Q13835 747 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 EPC2Q52LR7 807 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 RINT1Q6NUQ1 792 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 C1orf186Q6ZWK4 172 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 TMEM192Q8IY95 271 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 SYT2Q8N9I0 419 aaPredicted RBP18.65■□□□□ 0.58
TRIM28-215ENST00000601150 KRI1Q8N9T8 703 aaKnown RBP18.65■□□□□ 0.58
TRIM28-215ENST00000601150 RNF169Q8NCN4 708 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 FBXO22Q8NEZ5 403 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 BSNDQ8WZ55 320 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 IFT74Q96LB3 600 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 TIPINQ9BVW5 301 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 CCSER1Q9C0I3 900 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 C2orf40Q9H1Z8 148 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 TFIP11Q9UBB9 837 aaKnown RBP18.65■□□□□ 0.58
TRIM28-215ENST00000601150 RWDD3Q9Y3V2 267 aa18.65■□□□□ 0.58
TRIM28-215ENST00000601150 TSPAN1O60635 241 aa18.64■□□□□ 0.57
TRIM28-215ENST00000601150 PLA2G4BP0C869 781 aa18.64■□□□□ 0.57
TRIM28-215ENST00000601150 HOXA11P31270 313 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-215ENST00000601150 KARSQ15046 597 aaKnown RBP18.64■□□□□ 0.57
TRIM28-215ENST00000601150 CDCA2Q69YH5 1023 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-215ENST00000601150 ZNF598Q86UK7 904 aaKnown RBP18.64■□□□□ 0.57
TRIM28-215ENST00000601150 LINC00301Q8NCQ3 95 aa18.64■□□□□ 0.57
TRIM28-215ENST00000601150 MAFAQ8NHW3 353 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-215ENST00000601150 DEPTORQ8TB45 409 aa18.64■□□□□ 0.57
TRIM28-215ENST00000601150 CLP1Q92989 425 aaKnown RBP18.64■□□□□ 0.57
TRIM28-215ENST00000601150 EPSTI1Q96J88 318 aa18.64■□□□□ 0.57
TRIM28-215ENST00000601150 DRC1Q96MC2 740 aa18.64■□□□□ 0.57
TRIM28-215ENST00000601150 POLD4Q9HCU8 107 aa18.64■□□□□ 0.57
TRIM28-215ENST00000601150 FAM105AQ9NUU6 356 aa18.64■□□□□ 0.57
TRIM28-215ENST00000601150 MRPL42Q9Y6G3 142 aaKnown RBP18.64■□□□□ 0.57
TRIM28-215ENST00000601150 TRANK1O15050 2925 aa18.64■□□□□ 0.57
TRIM28-215ENST00000601150 TBKBP1A7MCY6 615 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 ZNF623O75123 536 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 HIP1RO75146 1068 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 YEATS4O95619 227 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 LINC00271P0C7V0 271 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 ATF7P17544 494 aaPredicted RBP18.63■□□□□ 0.57
TRIM28-215ENST00000601150 PLCG1P19174 1290 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 POU3F3P20264 500 aaPredicted RBP18.63■□□□□ 0.57
TRIM28-215ENST00000601150 GUCY2CP25092 1073 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 CTNNB1P35222 781 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 TXLNAP40222 546 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 SLC12A3P55017 1021 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 AMHR2Q16671 573 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 SPECC1Q5M775 1068 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 ATL3Q6DD88 541 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 USP49Q70CQ1 688 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 ABI1Q8IZP0 508 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 GDPD5Q8WTR4 605 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 SYMPKQ92797 1274 aaKnown RBP18.63■□□□□ 0.57
TRIM28-215ENST00000601150 CCDC51Q96ER9 411 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 CLIC6Q96NY7 704 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 TMEM117Q9H0C3 514 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 RNF19AQ9NV58 838 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 PRMT7Q9NVM4 692 aaPredicted RBP18.63■□□□□ 0.57
TRIM28-215ENST00000601150 KCND2Q9NZV8 630 aa18.63■□□□□ 0.57
TRIM28-215ENST00000601150 SPTLC2O15270 562 aa18.62■□□□□ 0.57
TRIM28-215ENST00000601150 GTPBP6O43824 516 aaPredicted RBP18.62■□□□□ 0.57
TRIM28-215ENST00000601150 RB1P06400 928 aa18.62■□□□□ 0.57
TRIM28-215ENST00000601150 BMPR1AP36894 532 aa18.62■□□□□ 0.57
TRIM28-215ENST00000601150 FOXD4L6Q3SYB3 417 aaPredicted RBP18.62■□□□□ 0.57
TRIM28-215ENST00000601150 UBXN11Q5T124 520 aa18.62■□□□□ 0.57
TRIM28-215ENST00000601150 NOTUMQ6P988 496 aa18.62■□□□□ 0.57
TRIM28-215ENST00000601150 FOXD4L3Q6VB84 417 aaPredicted RBP18.62■□□□□ 0.57
TRIM28-215ENST00000601150 DAW1Q8N136 415 aa18.62■□□□□ 0.57
TRIM28-215ENST00000601150 CPB2Q96IY4 423 aa18.62■□□□□ 0.57
TRIM28-215ENST00000601150 PRIMPOLQ96LW4 560 aa18.62■□□□□ 0.57
TRIM28-215ENST00000601150 FZD8Q9H461 694 aa18.62■□□□□ 0.57
TRIM28-215ENST00000601150 BLOC1S4Q9NUP1 217 aa18.62■□□□□ 0.57
TRIM28-215ENST00000601150 CCDC39Q9UFE4 941 aa18.62■□□□□ 0.57
TRIM28-215ENST00000601150 PCDHB2Q9Y5E7 798 aa18.62■□□□□ 0.57
TRIM28-215ENST00000601150 C5orf67F2Z3F1 127 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 H3BNC9 293 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 LPXNO60711 386 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 PPP6R2O75170 966 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 ARF4P18085 180 aaPredicted RBP18.61■□□□□ 0.57
TRIM28-215ENST00000601150 EFNA5P52803 228 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 MAPK7Q13164 816 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 GPM6BQ13491 265 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 MAPK6Q16659 721 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 FAM187BQ17R55 369 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 CLLU1OSQ5K130 101 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 PPP4R3CPQ6ZMV5 832 aa18.61■□□□□ 0.57
TRIM28-215ENST00000601150 LRRC15Q8TF66 581 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms