RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 NDOR1Q9UHB4 597 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 PNMA2Q9UL42 364 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 SLX4Q8IY92 1834 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 PLIN4Q96Q06 1357 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 CLRN2A0PK11 232 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 ANO9A1A5B4 782 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 VPS37CA5D8V6 355 aaPredicted RBP5.8□□□□□ -1.48
LDLR-209ENST00000558528 DDTLA6NHG4 134 aaPredicted RBP5.8□□□□□ -1.48
LDLR-209ENST00000558528 K7ESF4 209 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 GABRDO14764 452 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 NRDCO43847 1150 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 CTNND1O60716 968 aaKnown RBP5.8□□□□□ -1.48
LDLR-209ENST00000558528 LARGE1O95461 756 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 PYGMP11217 842 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 CALML3P27482 149 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 SHMT1P34896 483 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 HTR3AP46098 478 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 USP14P54578 494 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 KRT85P78386 507 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 PRR20EP86478 221 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 PRR20CP86479 221 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 PRR20DP86480 221 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 PRR20BP86481 221 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 PRR20AP86496 221 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 UBAP2LQ14157 1087 aaKnown RBP5.8□□□□□ -1.48
LDLR-209ENST00000558528 GRM4Q14833 912 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 SETDB1Q15047 1291 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 YOD1Q5VVQ6 348 aaPredicted RBP5.8□□□□□ -1.48
LDLR-209ENST00000558528 MCTP2Q6DN12 878 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 RIPOR1Q6ZS17 1223 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 HFE2Q6ZVN8 426 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 LRRN4CLQ8ND94 238 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 CCDC148Q8NFR7 591 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 FBXO18Q8NFZ0 1043 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 DCAF4Q8WV16 495 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 PTPRN2Q92932 1015 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 TNPO1Q92973 898 aaKnown RBP5.8□□□□□ -1.48
LDLR-209ENST00000558528 TTC17Q96AE7 1141 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 E2F7Q96AV8 911 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 CCDC140Q96MF4 163 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 TMEM47Q9BQJ4 181 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 ALG1Q9BT22 464 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 SLC26A6Q9BXS9 759 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 ZNF341Q9BYN7 854 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 RHOBTB2Q9BYZ6 727 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 SLC13A1Q9BZW2 595 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 DEFB129Q9H1M3 183 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 AS3MTQ9HBK9 375 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 SH3GLB2Q9NR46 395 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 IL17RBQ9NRM6 502 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 OBP2AQ9NY56 170 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 CLIP2Q9UDT6 1046 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 SEC63Q9UGP8 760 aaKnown RBP5.8□□□□□ -1.48
LDLR-209ENST00000558528 STXBP5LQ9Y2K9 1186 aa5.8□□□□□ -1.48
LDLR-209ENST00000558528 TNPO3Q9Y5L0 923 aaKnown RBP5.8□□□□□ -1.48
LDLR-209ENST00000558528 CACNA1SQ13698 1873 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 DOCK2Q92608 1830 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 IGKV6D-41A0A0C4DH26 115 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 FIGNL2A6NMB9 653 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 KLRF2D3W0D1 207 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 SOX1O00570 391 aaPredicted RBP5.79□□□□□ -1.48
LDLR-209ENST00000558528 RGS13O14921 159 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 BNIP3LO60238 219 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 KPNA6O60684 536 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 SIN3BO75182 1162 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 PPM1BO75688 479 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 SNUPNO95149 360 aaKnown RBP5.79□□□□□ -1.48
LDLR-209ENST00000558528 BAG4O95429 457 aaKnown RBP5.79□□□□□ -1.48
LDLR-209ENST00000558528 ITGAVP06756 1048 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 EPHX1P07099 455 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 AKR1B1P15121 316 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 SELPP16109 830 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 CD53P19397 219 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 GNA11P29992 359 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 CAP2P40123 477 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 EPS15P42566 896 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 CACNB3P54284 484 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 OCRLQ01968 901 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 ICA1Q05084 483 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 INPP5AQ14642 412 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 PCBP1Q15365 356 aaKnown RBP eCLIP5.79□□□□□ -1.48
LDLR-209ENST00000558528 NFKBIBQ15653 356 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 NTRK3Q16288 839 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 NBPF9Q3BBW0 867 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 TMEM95Q3KNT9 176 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 TBC1D10BQ4KMP7 808 aaPredicted RBP5.79□□□□□ -1.48
LDLR-209ENST00000558528 FAM117BQ6P1L5 589 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 ELMSAN1Q6PJG2 1045 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 TMTC3Q6ZXV5 915 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 FAM35AQ86V20 835 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.79□□□□□ -1.48
LDLR-209ENST00000558528 PHACTR4Q8IZ21 702 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 FAM13CQ8NE31 585 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 BVESQ8NE79 360 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 GMCL1P1Q8NEA9 526 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 BICD2Q8TD16 824 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 CHURC1Q8WUH1 139 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 TTC9Q92623 222 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 PPP1R14AQ96A00 147 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 RRP36Q96EU6 259 aaKnown RBP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms