RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 STX19Q8N4C7 294 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 CCNYL1Q8N7R7 359 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 MCPH1Q8NEM0 835 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 OTUB1Q96FW1 271 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-209ENST00000537178 DNAJC5Q9H3Z4 198 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 SH2B2O14492 632 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-209ENST00000537178 EFTUD2Q15029 972 aaKnown RBP eCLIP11.33□□□□□ -0.64e-6■■□□□ 11.5
CLIP1-209ENST00000537178 USPL1Q5W0Q7 1092 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 PPP4R4Q6NUP7 873 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 RRM2BQ7LG56 351 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 PPEF1O14829 653 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-209ENST00000537178 BLVRAP53004 296 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 FBXW4P57775 412 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 AP2B1P63010 937 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 ARHGAP18Q8N392 663 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 TEKT4Q8WW24 435 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 NLRP4Q96MN2 994 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 SMYD3Q9H7B4 428 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 DNAJC12Q9UKB3 198 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 HPCAL4Q9UM19 191 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 GOLGA8IPA6NC78 632 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 GOLGA8JA6NMD2 632 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 KCNQ3O43525 872 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 GDF11O95390 407 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 IL6STP40189 918 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-209ENST00000537178 ACBD5Q5T8D3 534 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-209ENST00000537178 IFT43Q96FT9 208 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 FAM167AQ96KS9 214 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 PRR36Q9H6K5 1346 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 BFARQ9NZS9 450 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 PNMA6FA0A0J9YX94 578 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 MYO1DO94832 1006 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 GPC5P78333 572 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 ST3GAL1Q11201 340 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 LBRQ14739 615 aaKnown RBP11.32□□□□□ -0.6
CLIP1-209ENST00000537178 NAALADL2Q58DX5 795 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 TAGAPQ8N103 731 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 OLFM3Q96PB7 478 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 PUS3Q9BZE2 481 aaKnown RBP11.32□□□□□ -0.6
CLIP1-209ENST00000537178 CEP72Q9P209 647 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 KIF17Q9P2E2 1029 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 MOSPD1Q9UJG1 213 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 LOC102724428A0A0B4J2F2 783 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 JAK3P52333 1124 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 SIK1P57059 783 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 KCNA1Q09470 495 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 AP3B2Q13367 1082 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 THNSL1Q8IYQ7 743 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 STAP1Q9ULZ2 295 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 SLC4A7Q9Y6M7 1214 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 METP08581 1390 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 LAMA4Q16363 1823 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 ZNF197O14709 1029 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 KRT8P05787 483 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 DDX5P17844 614 aaKnown RBP11.32□□□□□ -0.6
CLIP1-209ENST00000537178 HADHAP40939 763 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 ARFIP2P53365 341 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 PEX3P56589 373 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 DYNLL1P63167 89 aaKnown RBP11.32□□□□□ -0.6
CLIP1-209ENST00000537178 TNFAIP2Q03169 654 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 PTPN21Q16825 1174 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 TBC1D9BQ66K14 1250 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 PROM2Q8N271 834 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 RMDN2Q96LZ7 410 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 TRIM54Q9BYV2 358 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 ATG3Q9NT62 314 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 ZFXP17010 805 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-209ENST00000537178 NNMTP40261 264 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 HDLBPQ00341 1268 aaKnown RBP11.32□□□□□ -0.6
CLIP1-209ENST00000537178 MAPRE2Q15555 327 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 USP17L2Q6R6M4 530 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 UNC13DQ70J99 1090 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 FOXP4Q8IVH2 680 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-209ENST00000537178 GCOM2Q9BZD3 368 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-209ENST00000537178 ADA2Q9NZK5 511 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 PCDHGB4Q9UN71 923 aa11.32□□□□□ -0.6
CLIP1-209ENST00000537178 NEMP1O14524 444 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 SDC4P31431 198 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 MECOMQ03112 1051 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 NFX1Q12986 1120 aaKnown RBP11.31□□□□□ -0.6
CLIP1-209ENST00000537178 FBXO38Q6PIJ6 1188 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 RGS9BPQ6ZS82 235 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 XXYLT1Q8NBI6 393 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 THOC1Q96FV9 657 aaKnown RBP11.31□□□□□ -0.6
CLIP1-209ENST00000537178 EPAS1Q99814 870 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 CLDN3O15551 220 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 EIF2AK2P19525 551 aaKnown RBP11.31□□□□□ -0.6
CLIP1-209ENST00000537178 MXD4Q14582 209 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-209ENST00000537178 CNPY4Q8N129 248 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 PPM1NQ8N819 430 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 SPATA17Q96L03 361 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 GPBP1L1Q9HC44 474 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-209ENST00000537178 SLAIN2Q9P270 581 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 ADAM21Q9UKJ8 722 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 PCDHB6Q9Y5E3 794 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 HUS1O60921 280 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 PALMO75781 387 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 MAP3K7CLP57077 242 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 POU5F1BQ06416 359 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 ITPRIPL1Q6GPH6 555 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms