RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 ZCCHC14Q8WYQ9 949 aaKnown RBP5.57□□□□□ -1.52
VPS13A-210ENST00000471439 TEPSINQ96N21 525 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 FEZ1Q99689 392 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 ZFYVE21Q9BQ24 234 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 KRTAP4-2Q9BYR5 136 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 SLC52A2Q9HAB3 445 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 RNF186Q9NXI6 227 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 CROTQ9UKG9 612 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 PCDHA8Q9Y5H6 950 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 C4AP0C0L4 1744 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 NSD2O96028 1365 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 A0A1W2PPC1 479 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 KRIT1O00522 736 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 KCNK3O14649 394 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 ZNF28P17035 718 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 CHRNA5P30532 468 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 GYS2P54840 703 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 GJA9P57773 515 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 PABPC4Q13310 644 aaKnown RBP eCLIP5.56□□□□□ -1.52
VPS13A-210ENST00000471439 TCEA2Q15560 299 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 RGL3Q3MIN7 710 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 ZC3H12BQ5HYM0 836 aaKnown RBP5.56□□□□□ -1.52
VPS13A-210ENST00000471439 FSTL4Q6MZW2 842 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 MTDHQ86UE4 582 aaKnown RBP5.56□□□□□ -1.52
VPS13A-210ENST00000471439 SYNE4Q8N205 404 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 NGDNQ8NEJ9 315 aaKnown RBP5.56□□□□□ -1.52
VPS13A-210ENST00000471439 CXorf38Q8TB03 319 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 PHOSPHO1Q8TCT1 267 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 NDOR1Q9UHB4 597 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 HDAC9Q9UKV0 1011 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 CBLCQ9ULV8 474 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 PCDHA9Q9Y5H5 950 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 PPIP5K1Q6PFW1 1433 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 ANKARQ7Z5J8 1434 aa5.56□□□□□ -1.52
VPS13A-210ENST00000471439 RPTORQ8N122 1335 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 CFAP54Q96N23 3096 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 DOT1LQ8TEK3 1739 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 TRAF5O00463 557 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 GCP02774 474 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 SRGAP2CP0DJJ0 459 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 PYGMP11217 842 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 SYN1P17600 705 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 SDSP20132 328 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 NOGQ13253 232 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 PAN2Q504Q3 1202 aaKnown RBP5.55□□□□□ -1.52
VPS13A-210ENST00000471439 BRAPQ7Z569 592 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 FGD2Q7Z6J4 655 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 DHX37Q8IY37 1157 aaKnown RBP5.55□□□□□ -1.52
VPS13A-210ENST00000471439 TTLL6Q8N841 843 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 TXNDC5Q8NBS9 432 aaKnown RBP5.55□□□□□ -1.52
VPS13A-210ENST00000471439 PCDH19Q8TAB3 1148 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 PTPRN2Q92932 1015 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 IPO9Q96P70 1041 aaKnown RBP5.55□□□□□ -1.52
VPS13A-210ENST00000471439 SFMBT1Q9UHJ3 866 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 DSEQ9UL01 958 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 CHD6Q8TD26 2715 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 ABCC11Q96J66 1382 aa5.55□□□□□ -1.52
VPS13A-210ENST00000471439 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-210ENST00000471439 FAM47E-STBD1D6RA91 191 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 ACOT7O00154 380 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 PLD2O14939 933 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 RASGRP1O95267 797 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 CRTAMO95727 393 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 COL6A1P12109 1028 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 EPHX2P34913 555 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 RBM10P98175 930 aaKnown RBP5.54□□□□□ -1.52
VPS13A-210ENST00000471439 TRIM61Q5EBN2 209 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 PRAMEF18Q5VWM3 479 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-210ENST00000471439 GSTCDQ8NEC7 633 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 TTLL11Q8NHH1 800 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 SCLYQ96I15 445 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 ALG1Q9BT22 464 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 MRPL4Q9BYD3 311 aaKnown RBP5.54□□□□□ -1.52
VPS13A-210ENST00000471439 KRTAP9-3Q9BYQ3 159 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 TRIM39Q9HCM9 518 aa5.54□□□□□ -1.52
VPS13A-210ENST00000471439 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-210ENST00000471439 ARVCFO00192 962 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 MAN2B1O00754 1011 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 DNAJC8O75937 253 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-210ENST00000471439 AMY2AP04746 511 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 FAHP16930 419 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 KRT15P19012 456 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 AMY2BP19961 511 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 GLRBP48167 497 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 GUCY1A3Q02108 690 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 SPIRE1Q08AE8 756 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 PAK1Q13153 545 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 ZNF460Q14592 562 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 UBXN11Q5T124 520 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 CD276Q5ZPR3 534 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 KCTD1Q719H9 257 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 MAMDC2Q7Z304 686 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-210ENST00000471439 PNMA8AQ86V59 439 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-210ENST00000471439 PTRH1Q86Y79 214 aaKnown RBP5.53□□□□□ -1.52
VPS13A-210ENST00000471439 CISD2Q8N5K1 135 aaKnown RBP5.53□□□□□ -1.52
VPS13A-210ENST00000471439 DTX3Q8N9I9 347 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 CLIC6Q96NY7 704 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 KRTAP4-11Q9BYQ6 195 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 HACL1Q9UJ83 578 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms