RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 AEBP2Q6ZN18 517 aaPredicted RBP22.68■■□□□ 1.22
VPS13A-210ENST00000471439 CHIC1Q5VXU3 224 aa21.82■■□□□ 1.08
VPS13A-210ENST00000471439 PHF23Q9BUL5 403 aaPredicted RBP19.26■□□□□ 0.67
VPS13A-210ENST00000471439 SENP3Q9H4L4 574 aaPredicted RBP19.11■□□□□ 0.65
VPS13A-210ENST00000471439 FOXD1Q16676 465 aa17.87■□□□□ 0.45
VPS13A-210ENST00000471439 PLPPR3Q6T4P5 718 aa17.57■□□□□ 0.4
VPS13A-210ENST00000471439 PPP6R1Q9UPN7 881 aa17.08■□□□□ 0.32
VPS13A-210ENST00000471439 ADRA2BP18089 450 aa17.04■□□□□ 0.32
VPS13A-210ENST00000471439 PIAS4Q8N2W9 510 aaPredicted RBP16.78■□□□□ 0.28
VPS13A-210ENST00000471439 MSH5O43196 834 aa16.5■□□□□ 0.23
VPS13A-210ENST00000471439 POTEDQ86YR6 584 aa15.77■□□□□ 0.12
VPS13A-210ENST00000471439 MAPK8IP2Q13387 824 aaPredicted RBP15.55■□□□□ 0.08
VPS13A-210ENST00000471439 PPP4R3CPQ6ZMV5 832 aa15.51■□□□□ 0.07
VPS13A-210ENST00000471439 SCAF1Q9H7N4 1312 aaKnown RBP15.37■□□□□ 0.05
VPS13A-210ENST00000471439 DMRT2Q9Y5R5 561 aa15.26■□□□□ 0.03
VPS13A-210ENST00000471439 CNKSR2Q8WXI2 1034 aa15.07■□□□□ 0
VPS13A-210ENST00000471439 KCNA4P22459 653 aa14.98□□□□□ -0.01
VPS13A-210ENST00000471439 NCBP3Q53F19 620 aaKnown RBP14.92□□□□□ -0.02
VPS13A-210ENST00000471439 NPM3O75607 178 aaKnown RBP14.86□□□□□ -0.03
VPS13A-210ENST00000471439 HOXD11P31277 338 aaPredicted RBP14.84□□□□□ -0.03
VPS13A-210ENST00000471439 RNF216Q9NWF9 866 aaPredicted RBP14.83□□□□□ -0.04
VPS13A-210ENST00000471439 DCAF8L1A6NGE4 600 aa14.65□□□□□ -0.06
VPS13A-210ENST00000471439 DNAJC5BQ9UF47 199 aa14.3□□□□□ -0.12
VPS13A-210ENST00000471439 SLC4A1APQ9BWU0 796 aaKnown RBP14.16□□□□□ -0.14
VPS13A-210ENST00000471439 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.15□□□□□ -0.14
VPS13A-210ENST00000471439 RNF39Q9H2S5 420 aa14.14□□□□□ -0.15
VPS13A-210ENST00000471439 SLC4A2P04920 1241 aa14.11□□□□□ -0.15
VPS13A-210ENST00000471439 CACNB1Q02641 598 aaPredicted RBP14□□□□□ -0.17
VPS13A-210ENST00000471439 U3KPZ7 1027 aaPredicted RBP13.98□□□□□ -0.17
VPS13A-210ENST00000471439 C1QBPQ07021 282 aaKnown RBP13.91□□□□□ -0.18
VPS13A-210ENST00000471439 ZBTB22O15209 634 aa13.85□□□□□ -0.19
VPS13A-210ENST00000471439 FOXD4L1Q9NU39 408 aa13.77□□□□□ -0.21
VPS13A-210ENST00000471439 SPINK5Q9NQ38 1064 aaPredicted RBP13.68□□□□□ -0.22
VPS13A-210ENST00000471439 MYCNP04198 464 aaPredicted RBP13.65□□□□□ -0.22
VPS13A-210ENST00000471439 EHMT2Q96KQ7 1210 aa13.61□□□□□ -0.23
VPS13A-210ENST00000471439 CAPN15O75808 1086 aa13.56□□□□□ -0.24
VPS13A-210ENST00000471439 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.52□□□□□ -0.25
VPS13A-210ENST00000471439 HNRNPUL2Q1KMD3 747 aaKnown RBP13.52□□□□□ -0.25
VPS13A-210ENST00000471439 SAMD1Q6SPF0 538 aaPredicted RBP13.52□□□□□ -0.25
VPS13A-210ENST00000471439 CSRNP3Q8WYN3 585 aa13.51□□□□□ -0.25
VPS13A-210ENST00000471439 TRHP20396 242 aaPredicted RBP13.47□□□□□ -0.25
VPS13A-210ENST00000471439 ATF5Q9Y2D1 282 aaPredicted RBP13.46□□□□□ -0.25
VPS13A-210ENST00000471439 DSG3P32926 999 aa13.4□□□□□ -0.26
VPS13A-210ENST00000471439 APLP2Q06481 763 aa13.4□□□□□ -0.26
VPS13A-210ENST00000471439 ABCB7O75027 752 aa13.37□□□□□ -0.27
VPS13A-210ENST00000471439 ZNF219Q9P2Y4 722 aaPredicted RBP13.36□□□□□ -0.27
VPS13A-210ENST00000471439 ATXN8OSP0DMR3 200 aa13.21□□□□□ -0.29
VPS13A-210ENST00000471439 POLA2Q14181 598 aa13.18□□□□□ -0.3
VPS13A-210ENST00000471439 MKRN4PQ13434 485 aaPredicted RBP12.84□□□□□ -0.35
VPS13A-210ENST00000471439 OSCARQ8IYS5 282 aa12.81□□□□□ -0.36
VPS13A-210ENST00000471439 ZBTB12Q9Y330 459 aaPredicted RBP12.8□□□□□ -0.36
VPS13A-210ENST00000471439 FBLN2P98095 1184 aa12.72□□□□□ -0.37
VPS13A-210ENST00000471439 RBM42Q9BTD8 480 aaKnown RBP12.66□□□□□ -0.38
VPS13A-210ENST00000471439 SPDYE2BA6NHP3 402 aa12.5□□□□□ -0.41
VPS13A-210ENST00000471439 SPDYE6P0CI01 402 aa12.5□□□□□ -0.41
VPS13A-210ENST00000471439 SPDYE2Q495Y8 402 aa12.5□□□□□ -0.41
VPS13A-210ENST00000471439 AKT1S1Q96B36 256 aa12.48□□□□□ -0.41
VPS13A-210ENST00000471439 ZNF692Q9BU19 519 aaPredicted RBP12.46□□□□□ -0.41
VPS13A-210ENST00000471439 SSUH2Q9Y2M2 353 aa12.44□□□□□ -0.42
VPS13A-210ENST00000471439 REM2Q8IYK8 340 aaPredicted RBP12.43□□□□□ -0.42
VPS13A-210ENST00000471439 POTEHQ6S545 545 aa12.39□□□□□ -0.43
VPS13A-210ENST00000471439 SPDYE4A6NLX3 237 aa12.36□□□□□ -0.43
VPS13A-210ENST00000471439 PITPNM1O00562 1244 aa12.33□□□□□ -0.44
VPS13A-210ENST00000471439 PABPN1Q86U42 306 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS13A-210ENST00000471439 CHRDL2Q6WN34 429 aa12.3□□□□□ -0.44
VPS13A-210ENST00000471439 FKBP8Q14318 412 aa12.22□□□□□ -0.45
VPS13A-210ENST00000471439 CLEC11AQ9Y240 323 aa12.22□□□□□ -0.45
VPS13A-210ENST00000471439 SPDYE1Q8NFV5 336 aaPredicted RBP12.18□□□□□ -0.46
VPS13A-210ENST00000471439 PIP4P2Q8N4L2 257 aa12.13□□□□□ -0.47
VPS13A-210ENST00000471439 PROM2Q8N271 834 aa12.12□□□□□ -0.47
VPS13A-210ENST00000471439 FXR2P51116 673 aaKnown RBP eCLIP12.09□□□□□ -0.47
VPS13A-210ENST00000471439 PRR29P0C7W0 189 aa12.02□□□□□ -0.49
VPS13A-210ENST00000471439 CHADLQ6NUI6 762 aa12.02□□□□□ -0.49
VPS13A-210ENST00000471439 PRKAR2AP13861 404 aaKnown RBP11.99□□□□□ -0.49
VPS13A-210ENST00000471439 STAG3Q9UJ98 1225 aa11.93□□□□□ -0.5
VPS13A-210ENST00000471439 CREBZFQ9NS37 354 aa11.9□□□□□ -0.5
VPS13A-210ENST00000471439 FARP1Q9Y4F1 1045 aaPredicted RBP11.79□□□□□ -0.52
VPS13A-210ENST00000471439 EVX2Q03828 476 aa11.77□□□□□ -0.53
VPS13A-210ENST00000471439 HAX1O00165 279 aa11.76□□□□□ -0.53
VPS13A-210ENST00000471439 MNX1P50219 401 aaPredicted RBP11.76□□□□□ -0.53
VPS13A-210ENST00000471439 MIER1Q8N108 512 aa11.71□□□□□ -0.53
VPS13A-210ENST00000471439 SP7Q8TDD2 431 aaPredicted RBP11.7□□□□□ -0.54
VPS13A-210ENST00000471439 C19orf67A6NJJ6 358 aa11.69□□□□□ -0.54
VPS13A-210ENST00000471439 PLCD3Q8N3E9 789 aa11.68□□□□□ -0.54
VPS13A-210ENST00000471439 FBXO3Q9UK99 471 aa11.68□□□□□ -0.54
VPS13A-210ENST00000471439 VASPP50552 380 aaPredicted RBP11.66□□□□□ -0.54
VPS13A-210ENST00000471439 CD44P16070 742 aaKnown RBP11.63□□□□□ -0.55
VPS13A-210ENST00000471439 NPM1P06748 294 aaKnown RBP eCLIP11.56□□□□□ -0.56
VPS13A-210ENST00000471439 PLEKHG5O94827 1062 aa11.55□□□□□ -0.56
VPS13A-210ENST00000471439 RASEFQ8IZ41 740 aa11.53□□□□□ -0.56
VPS13A-210ENST00000471439 ZRANB1Q9UGI0 708 aa11.53□□□□□ -0.56
VPS13A-210ENST00000471439 IFNLR1Q8IU57 520 aaPredicted RBP11.52□□□□□ -0.57
VPS13A-210ENST00000471439 NUBP1P53384 320 aa11.49□□□□□ -0.57
VPS13A-210ENST00000471439 TSPYL2Q9H2G4 693 aaPredicted RBP11.49□□□□□ -0.57
VPS13A-210ENST00000471439 PHF12Q96QT6 1004 aa11.48□□□□□ -0.57
VPS13A-210ENST00000471439 KLHL34Q8N239 644 aa11.47□□□□□ -0.57
VPS13A-210ENST00000471439 ZNF579Q8NAF0 562 aaKnown RBP11.45□□□□□ -0.58
VPS13A-210ENST00000471439 ZBTB47Q9UFB7 747 aaPredicted RBP11.45□□□□□ -0.58
VPS13A-210ENST00000471439 GABBR2O75899 941 aa11.43□□□□□ -0.58
VPS13A-210ENST00000471439 PAK3O75914 559 aaPredicted RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms