RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PMLP29590 882 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 ADD1P35611 737 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 HAND2P61296 217 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 CUL4AQ13619 759 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 CALCRLQ16602 461 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 DCAF4L1Q3SXM0 396 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 TEX35Q5T0J7 233 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 VASH1Q7L8A9 365 aaPredicted RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 C16orf62Q7Z3J2 963 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 CYP2U1Q7Z449 544 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 SPICE1Q8N0Z3 855 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 WDR48Q8TAF3 677 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 LLPHQ9BRT6 129 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 CIPCQ9C0C6 399 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 LMAN2LQ9H0V9 348 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 GPRC5DQ9NZD1 345 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 LCMT1Q9UIC8 334 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 DDX41Q9UJV9 622 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 PRG3Q9Y2Y8 225 aaPredicted RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 WDR97A6NE52 1622 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 FAM170AA1A519 330 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 FLT3LGP49771 235 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 CDH18Q13634 790 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 STILQ15468 1287 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 TCEA2Q15560 299 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 EMC10Q5UCC4 262 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 ZCCHC8Q6NZY4 707 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 PI16Q6UXB8 463 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 PHACTR4Q8IZ21 702 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 EXD1Q8NHP7 514 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 TRIM11Q96F44 468 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 PPP1R2P1Q96PQ5 205 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 PHF20Q9BVI0 1012 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 PRRG4Q9BZD6 226 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 TMEM260Q9NX78 707 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 NDUFB9Q9Y6M9 179 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 MBL2P11226 248 aaPredicted RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 ODC1P11926 461 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 MAP4P27816 1152 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 CDC25CP30307 473 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 SOX5P35711 763 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 TFAMQ00059 246 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 CEBPZQ03701 1054 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 CAMK4Q16566 473 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 ANO4Q32M45 955 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 COL23A1Q86Y22 540 aaPredicted RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 RNF217Q8TC41 542 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 IRF7Q92985 503 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 BRF1Q92994 677 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 CACNA2D2Q9NY47 1150 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 CRYL1Q9Y2S2 319 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 TDP2O95551 362 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 ZBED1O96006 694 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 CCL5P13501 91 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 GRIK1P39086 918 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 RANBP1P43487 201 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 STAT5BP51692 787 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 PAK1Q13153 545 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 ZNF235Q14590 738 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 ZNF284Q2VY69 593 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 ZNF484Q5JVG2 852 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 NOTUMQ6P988 496 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 PPP1R21Q6ZMI0 780 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 LRRC47Q8N1G4 583 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 MTMR14Q8NCE2 650 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 XAGE2Q96GT9 111 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 KLHL5Q96PQ7 755 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 MCOLN1Q9GZU1 580 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 CHST12Q9NRB3 414 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 OLA1Q9NTK5 396 aaKnown RBP4.39□□□□□ -1.71
USH2A-202ENST00000366942 KCTD5Q9NXV2 234 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 SRRDQ9UH36 339 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 KCNH3Q9ULD8 1083 aa4.39□□□□□ -1.71
USH2A-202ENST00000366942 RPN2P04844 631 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 PTPN3P26045 913 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 NASPP49321 788 aaPredicted RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 PAPOLAP51003 745 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 CCDC6Q16204 474 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 CTXN3Q4LDR2 81 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 RABGAP1LQ5R372 815 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 SEL1L2Q5TEA6 688 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 CHTF18Q8WVB6 975 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 IFT43Q96FT9 208 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ZSWIM4Q9H7M6 989 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 METTL14Q9HCE5 456 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 RAD18Q9NS91 495 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 LMBRD1Q9NUN5 540 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 TBC1D14Q9P2M4 693 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ABHD14A-ACY1A0A1B0GW23 586 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 SOWAHDA6NJG2 315 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 K7ENM7 598 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 POLRMTO00411 1230 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 SPTLC2O15270 562 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 ZC3H11AO75152 810 aaKnown RBP eCLIP4.38□□□□□ -1.71
USH2A-202ENST00000366942 DARSP14868 501 aaKnown RBP4.38□□□□□ -1.71
USH2A-202ENST00000366942 CDK17Q00537 523 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 GUCY1B3Q02153 619 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 RASSF7Q02833 373 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 PKDCCQ504Y2 493 aa4.38□□□□□ -1.71
USH2A-202ENST00000366942 PRR16Q569H4 304 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms