RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 SPDYE16A6NNV3 312 aaPredicted RBP24.57■■□□□ 1.52
LDB1-201ENST00000361198 F8VZ95 297 aa24.57■■□□□ 1.52
LDB1-201ENST00000361198 STAT1P42224 750 aa24.57■■□□□ 1.52
LDB1-201ENST00000361198 PAFAH1B1P43034 410 aa24.57■■□□□ 1.52
LDB1-201ENST00000361198 NCKAP1LP55160 1127 aa24.57■■□□□ 1.52
LDB1-201ENST00000361198 MYL7Q01449 175 aa24.57■■□□□ 1.52
LDB1-201ENST00000361198 NOL9Q5SY16 702 aaKnown RBP24.57■■□□□ 1.52
LDB1-201ENST00000361198 RDM1Q8NG50 284 aa24.57■■□□□ 1.52
LDB1-201ENST00000361198 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.57■■□□□ 1.522e-13■□□□□ 9
LDB1-201ENST00000361198 TMEM174Q8WUU8 243 aa24.57■■□□□ 1.52
LDB1-201ENST00000361198 SENP7Q9BQF6 1050 aa24.57■■□□□ 1.52
LDB1-201ENST00000361198 INTS2Q9H0H0 1204 aaKnown RBP24.57■■□□□ 1.52
LDB1-201ENST00000361198 SMARCAL1Q9NZC9 954 aa24.57■■□□□ 1.52
LDB1-201ENST00000361198 EHD2Q9NZN4 543 aa24.57■■□□□ 1.52
LDB1-201ENST00000361198 EVI5O60447 810 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 FERP16591 822 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 TNFRSF8P28908 595 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 DRAP1Q14919 205 aaPredicted RBP24.56■■□□□ 1.52
LDB1-201ENST00000361198 DLK2Q6UY11 383 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 C12orf56Q8IXR9 622 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 GABBR1Q9UBS5 961 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 NENFQ9UMX5 172 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 A0A0U1RQG5 324 aaPredicted RBP24.56■■□□□ 1.52
LDB1-201ENST00000361198 ZNF862O60290 1169 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 FTCDO95954 541 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 KRT13P13646 458 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 SOX5P35711 763 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 CCDC181Q5TID7 509 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 INTS8Q75QN2 995 aaKnown RBP24.56■■□□□ 1.52
LDB1-201ENST00000361198 RIN2Q8WYP3 895 aaPredicted RBP24.56■■□□□ 1.52
LDB1-201ENST00000361198 GPR88Q9GZN0 384 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 HOXC10Q9NYD6 342 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 HSPBP1Q9NZL4 362 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 APEX2Q9UBZ4 518 aa24.56■■□□□ 1.52
LDB1-201ENST00000361198 BTNL10A8MVZ5 291 aa24.55■■□□□ 1.52
LDB1-201ENST00000361198 USP2O75604 605 aaPredicted RBP24.55■■□□□ 1.52
LDB1-201ENST00000361198 SUPT20HL1Q3ZLR7 823 aa24.55■■□□□ 1.52
LDB1-201ENST00000361198 GLE1Q53GS7 698 aaKnown RBP24.55■■□□□ 1.52
LDB1-201ENST00000361198 LMO3Q8TAP4 145 aa24.55■■□□□ 1.52
LDB1-201ENST00000361198 STIM2Q9P246 746 aa24.55■■□□□ 1.52
LDB1-201ENST00000361198 GOLGA6BA6NDN3 693 aa24.55■■□□□ 1.52
LDB1-201ENST00000361198 DDX3XO00571 662 aaKnown RBP eCLIP24.55■■□□□ 1.524e-10■■■□□ 17.4
LDB1-201ENST00000361198 ANXA13P27216 316 aa24.55■■□□□ 1.52
LDB1-201ENST00000361198 LRRC31Q6UY01 552 aa24.55■■□□□ 1.52
LDB1-201ENST00000361198 XXYLT1Q8NBI6 393 aa24.55■■□□□ 1.52
LDB1-201ENST00000361198 EMSYQ7Z589 1322 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 GRID2IPA4D2P6 1211 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 VAMP7P51809 220 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 SP4Q02446 784 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 PHLDB3Q6NSJ2 640 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 VPS36Q86VN1 386 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 OLIG1Q8TAK6 271 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 KIFC3Q9BVG8 833 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 PACSIN2Q9UNF0 486 aaPredicted RBP24.54■■□□□ 1.52
LDB1-201ENST00000361198 CCDC169A6NNP5 214 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 PPP3CAQ08209 521 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 MEI1Q5TIA1 1274 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 SWSAP1Q6NVH7 229 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 EMBQ6PCB8 327 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 TMEM161BQ8NDZ6 487 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 TSPYL1Q9H0U9 437 aa24.54■■□□□ 1.52
LDB1-201ENST00000361198 STBD1O95210 358 aa24.53■■□□□ 1.52
LDB1-201ENST00000361198 NPTX2P47972 431 aa24.53■■□□□ 1.52
LDB1-201ENST00000361198 EPHB4P54760 987 aa24.53■■□□□ 1.52
LDB1-201ENST00000361198 SOX10P56693 466 aa24.53■■□□□ 1.52
LDB1-201ENST00000361198 CFAP221Q4G0U5 840 aa24.53■■□□□ 1.52
LDB1-201ENST00000361198 C1orf220Q5T0J3 134 aa24.53■■□□□ 1.52
LDB1-201ENST00000361198 SND1Q7KZF4 910 aaKnown RBP eCLIP24.53■■□□□ 1.52
LDB1-201ENST00000361198 MS4A14Q96JA4 679 aa24.53■■□□□ 1.52
LDB1-201ENST00000361198 CEP170P1Q96L14 293 aa24.53■■□□□ 1.52
LDB1-201ENST00000361198 JPH1Q9HDC5 661 aaPredicted RBP24.53■■□□□ 1.52
LDB1-201ENST00000361198 SORBS3O60504 671 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 LRRN2O75325 713 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 LMNB1P20700 586 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 DNA2P51530 1060 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.52■■□□□ 1.52
LDB1-201ENST00000361198 OTUD6AQ7L8S5 288 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 SRLQ86TD4 932 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 LNX1Q8TBB1 728 aaPredicted RBP24.52■■□□□ 1.52
LDB1-201ENST00000361198 PLEKHO2Q8TD55 490 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 IWS1Q96ST2 819 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 RBM12Q9NTZ6 932 aaKnown RBP24.52■■□□□ 1.52
LDB1-201ENST00000361198 SNCAIPQ9Y6H5 919 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 SLC7A5Q01650 507 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 VGLL4Q14135 290 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 SH3D19Q5HYK7 790 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 CCDC60Q8IWA6 550 aaPredicted RBP24.52■■□□□ 1.52
LDB1-201ENST00000361198 BSNDQ8WZ55 320 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 ATP6V0A1Q93050 837 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 CAVIN3Q969G5 261 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 SH3GL2Q99962 352 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 SLC9A2Q9UBY0 812 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 TBX20Q9UMR3 447 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 LCTP09848 1927 aa24.52■■□□□ 1.52
LDB1-201ENST00000361198 DICER1Q9UPY3 1922 aaKnown RBP24.52■■□□□ 1.52
LDB1-201ENST00000361198 PEX10O60683 326 aa24.51■■□□□ 1.51
LDB1-201ENST00000361198 SHOX2O60902 331 aaPredicted RBP24.51■■□□□ 1.51
LDB1-201ENST00000361198 ADSSP30520 456 aa24.51■■□□□ 1.51
LDB1-201ENST00000361198 MATR3P43243 847 aaKnown RBP eCLIP24.51■■□□□ 1.51
LDB1-201ENST00000361198 GCLMP48507 274 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms