RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 A0A1W2PQC6 194 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 TISP43B9A030 160 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 FKTNO75072 461 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 MYL3P08590 195 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 ELNP15502 786 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 KLRC1P26715 233 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 CNGA1P29973 690 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 PSMC2P35998 433 aaKnown RBP20.46■□□□□ 0.87
CLN3-204ENST00000357857 BEX3Q00994 111 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 LAMTOR4Q0VGL1 99 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 GRIK4Q16099 956 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 CCDC150Q8NCX0 1101 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 KAT2BQ92831 832 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 FRMD4BQ9Y2L6 1034 aa20.46■□□□□ 0.87
CLN3-204ENST00000357857 SEPT4O43236 478 aa20.45■□□□□ 0.86
CLN3-204ENST00000357857 ADCY3O60266 1144 aa20.45■□□□□ 0.86
CLN3-204ENST00000357857 CLCN3P51790 818 aa20.45■□□□□ 0.86
CLN3-204ENST00000357857 STRN3Q13033 797 aa20.45■□□□□ 0.86
CLN3-204ENST00000357857 ARID5BQ14865 1188 aa20.45■□□□□ 0.86
CLN3-204ENST00000357857 ARMCX5Q6P1M9 558 aa20.45■□□□□ 0.86
CLN3-204ENST00000357857 FAM186BQ8IYM0 893 aa20.45■□□□□ 0.86
CLN3-204ENST00000357857 ZBTB10Q96DT7 871 aa20.45■□□□□ 0.86
CLN3-204ENST00000357857 KCNF1Q9H3M0 494 aa20.45■□□□□ 0.86
CLN3-204ENST00000357857 TMEM134Q9H6X4 195 aa20.45■□□□□ 0.86
CLN3-204ENST00000357857 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.45■□□□□ 0.86
CLN3-204ENST00000357857 RRN3P2A6NIE6 340 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 ANKRD63C9JTQ0 380 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 K7ERI5 159 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 ASAP2O43150 1006 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 EXOC3O60645 756 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 GJA9P57773 515 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 MFSD10Q14728 455 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 KIAA0753Q2KHM9 967 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 MTHFD1LQ6UB35 978 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 RHPN2Q8IUC4 686 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 LINC01465Q8N7H1 131 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 CACTINQ8WUQ7 758 aaKnown RBP20.44■□□□□ 0.86
CLN3-204ENST00000357857 BICD1Q96G01 975 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 CBWD1Q9BRT8 395 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.44■□□□□ 0.86
CLN3-204ENST00000357857 PHLPP2Q6ZVD8 1323 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 HMGCRP04035 888 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 SRGAP2CP0DJJ0 459 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 PRKAR2AP13861 404 aaKnown RBP20.44■□□□□ 0.86
CLN3-204ENST00000357857 PSEN2P49810 448 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 PPP2R3AQ06190 1150 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 TFDP1Q14186 410 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 ARHGEF6Q15052 776 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 PPFIBP1Q86W92 1011 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 LRRC8AQ8IWT6 810 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 RAET1EQ8TD07 263 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 ERGIC2Q96RQ1 377 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 UPF3AQ9H1J1 476 aaKnown RBP20.44■□□□□ 0.86
CLN3-204ENST00000357857 PCIF1Q9H4Z3 704 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 HSPBP1Q9NZL4 362 aa20.44■□□□□ 0.86
CLN3-204ENST00000357857 HNRNPDLO14979 420 aaKnown RBP20.43■□□□□ 0.86
CLN3-204ENST00000357857 C6orf222P0C671 652 aaPredicted RBP20.43■□□□□ 0.86
CLN3-204ENST00000357857 RARBP10826 455 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 SFPQP23246 707 aaKnown RBP eCLIP20.43■□□□□ 0.86
CLN3-204ENST00000357857 TMOD1P28289 359 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 EFNA5P52803 228 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 CHMP4BP1P59074 171 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 CDCA2Q69YH5 1023 aaPredicted RBP20.43■□□□□ 0.86
CLN3-204ENST00000357857 SLC39A4Q6P5W5 647 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 ZBTB8OSQ8IWT0 167 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 XXYLT1Q8NBI6 393 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 RNF149Q8NC42 400 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 ZNF296Q8WUU4 475 aaPredicted RBP20.43■□□□□ 0.86
CLN3-204ENST00000357857 BORCS6Q96GS4 357 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 KATNAL1Q9BW62 490 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 C2orf40Q9H1Z8 148 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 SPC25Q9HBM1 224 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 ZKSCAN5Q9Y2L8 839 aa20.43■□□□□ 0.86
CLN3-204ENST00000357857 HAS3O00219 553 aa20.42■□□□□ 0.86
CLN3-204ENST00000357857 KPNA6O60684 536 aa20.42■□□□□ 0.86
CLN3-204ENST00000357857 SMIM10L2AP0DMW4 78 aa20.42■□□□□ 0.86
CLN3-204ENST00000357857 SMIM10L2BP0DMW5 78 aa20.42■□□□□ 0.86
CLN3-204ENST00000357857 CCND3P30281 292 aaPredicted RBP20.42■□□□□ 0.86
CLN3-204ENST00000357857 LIG4P49917 911 aa20.42■□□□□ 0.86
CLN3-204ENST00000357857 LRMPQ12912 555 aa20.42■□□□□ 0.86
CLN3-204ENST00000357857 TRIM14Q14142 442 aa20.42■□□□□ 0.86
CLN3-204ENST00000357857 SYCP1Q15431 976 aa20.42■□□□□ 0.86
CLN3-204ENST00000357857 MARCH8Q5T0T0 291 aa20.42■□□□□ 0.86
CLN3-204ENST00000357857 ZSCAN30Q86W11 494 aa20.42■□□□□ 0.86
CLN3-204ENST00000357857 SETD4Q9NVD3 440 aa20.42■□□□□ 0.86
CLN3-204ENST00000357857 NRCAMQ92823 1304 aa20.42■□□□□ 0.86
CLN3-204ENST00000357857 MYADML2A6NDP7 307 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 PIGRP01833 764 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 GJB1P08034 283 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 ADSSP30520 456 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 PURAQ00577 322 aaKnown RBP20.41■□□□□ 0.86
CLN3-204ENST00000357857 PXYLP1Q8TE99 480 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 LMBR1Q8WVP7 490 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 NLRP4Q96MN2 994 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 TRIP12Q14669 1992 aaPredicted RBP20.41■□□□□ 0.86
CLN3-204ENST00000357857 TPM1P09493 284 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 GARTP22102 1010 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 NKX3-2P78367 333 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 RBL2Q08999 1139 aa20.41■□□□□ 0.86
CLN3-204ENST00000357857 KCNH2Q12809 1159 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms