RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C ZEO1Q08245 113 aa4.54□□□□□ -1.68
NUP116YMR047C FYV7Q12247 151 aa4.54□□□□□ -1.68
NUP116YMR047C BCY1P07278 416 aaKnown RBP4.53□□□□□ -1.68
NUP116YMR047C ERG20P08524 352 aaKnown RBP4.53□□□□□ -1.68
NUP116YMR047C RPS21AP0C0V8 87 aaKnown RBP4.53□□□□□ -1.68
NUP116YMR047C YFR010W-AP0C5N0 62 aa4.53□□□□□ -1.68
NUP116YMR047C RIM2P38127 377 aa4.53□□□□□ -1.68
NUP116YMR047C RSP5P39940 809 aaKnown RBP4.53□□□□□ -1.68
NUP116YMR047C SOK1P40317 901 aa4.53□□□□□ -1.68
NUP116YMR047C VHR1P40522 640 aa4.53□□□□□ -1.68
NUP116YMR047C PMT3P47190 753 aa4.53□□□□□ -1.68
NUP116YMR047C USE1P53146 245 aa4.53□□□□□ -1.68
NUP116YMR047C VOA1P53262 265 aa4.53□□□□□ -1.68
NUP116YMR047C HPT1Q04178 221 aaKnown RBP4.53□□□□□ -1.68
NUP116YMR047C YOR238WQ08634 303 aa4.53□□□□□ -1.68
NUP116YMR047C TMA17Q12513 150 aa4.53□□□□□ -1.68
NUP116YMR047C ADH7P25377 361 aa4.53□□□□□ -1.68
NUP116YMR047C PHO91P27514 894 aa4.53□□□□□ -1.68
NUP116YMR047C CAM1P29547 415 aaKnown RBP4.53□□□□□ -1.68
NUP116YMR047C VMA5P31412 392 aaKnown RBP4.53□□□□□ -1.68
NUP116YMR047C HXT4P32467 576 aa4.53□□□□□ -1.68
NUP116YMR047C ERG1P32476 496 aaKnown RBP4.53□□□□□ -1.68
NUP116YMR047C RRN10P38204 145 aa4.53□□□□□ -1.68
NUP116YMR047C HRB1P38922 454 aaKnown RBP RIP-Chip data4.53□□□□□ -1.68not detected
NUP116YMR047C PLB1P39105 664 aa4.53□□□□□ -1.68
NUP116YMR047C SEN34P39707 275 aa4.53□□□□□ -1.68
NUP116YMR047C GIP2P40036 548 aa4.53□□□□□ -1.68
NUP116YMR047C MAD2P40958 196 aa4.53□□□□□ -1.68
NUP116YMR047C LIA1P47120 325 aaKnown RBP4.53□□□□□ -1.68
NUP116YMR047C COG5P53951 403 aa4.53□□□□□ -1.68
NUP116YMR047C RIM13Q03792 727 aa4.53□□□□□ -1.68
NUP116YMR047C YDR444WQ04093 687 aa4.53□□□□□ -1.68
NUP116YMR047C PEX10Q05568 337 aa4.53□□□□□ -1.68
NUP116YMR047C FEX2Q08991 375 aa4.53□□□□□ -1.68
NUP116YMR047C YPR096CO13587 100 aa4.52□□□□□ -1.69
NUP116YMR047C PHO81P17442 1178 aa4.52□□□□□ -1.69
NUP116YMR047C SRV2P17555 526 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C DGR2P32330 852 aa4.52□□□□□ -1.69
NUP116YMR047C GSP1P32835 219 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C GSP2P32836 220 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C TRM5P38793 499 aa4.52□□□□□ -1.69
NUP116YMR047C YAR1P46683 200 aa4.52□□□□□ -1.69
NUP116YMR047C YJL043WP47053 257 aa4.52□□□□□ -1.69
NUP116YMR047C YGR053CP53234 283 aa4.52□□□□□ -1.69
NUP116YMR047C ATF2P53296 535 aa4.52□□□□□ -1.69
NUP116YMR047C HST3P53687 447 aa4.52□□□□□ -1.69
NUP116YMR047C BUD17P53727 317 aa4.52□□□□□ -1.69
NUP116YMR047C CWC27Q02770 301 aa4.52□□□□□ -1.69
NUP116YMR047C YPL080CQ02826 108 aa4.52□□□□□ -1.69
NUP116YMR047C GAS3Q03655 524 aa4.52□□□□□ -1.69
NUP116YMR047C YLR179CQ06252 201 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C SSK1Q07084 712 aa4.52□□□□□ -1.69
NUP116YMR047C NBA1Q08229 501 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C INP53Q12271 1107 aa4.52□□□□□ -1.69
NUP116YMR047C PSY3Q12318 242 aa4.52□□□□□ -1.69
NUP116YMR047C MTR10Q99189 972 aa4.52□□□□□ -1.69
NUP116YMR047C CDC9P04819 755 aa4.52□□□□□ -1.69
NUP116YMR047C TY1A-LR4P0C2I8 440 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C TY1A-DR6P0CX70 440 aa4.52□□□□□ -1.69
NUP116YMR047C TY1A-ER1P0CX71 440 aa4.52□□□□□ -1.69
NUP116YMR047C TY1A-LR2P0CX72 440 aa4.52□□□□□ -1.69
NUP116YMR047C TY1A-PLP0CX73 440 aa4.52□□□□□ -1.69
NUP116YMR047C TY1A-JR1P0CX74 440 aa4.52□□□□□ -1.69
NUP116YMR047C TY1A-LR3P0CX75 440 aa4.52□□□□□ -1.69
NUP116YMR047C TY1A-ML2P0CX76 440 aa4.52□□□□□ -1.69
NUP116YMR047C GFD2P25370 566 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C ILV6P25605 309 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C PTM1P32857 523 aa4.52□□□□□ -1.69
NUP116YMR047C YNK1P36010 153 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C SHG1P38337 142 aa4.52□□□□□ -1.69
NUP116YMR047C SLD3P53135 668 aa4.52□□□□□ -1.69
NUP116YMR047C GPI1P53306 609 aa4.52□□□□□ -1.69
NUP116YMR047C RRN9P53437 365 aa4.52□□□□□ -1.69
NUP116YMR047C MTQ1P53944 314 aa4.52□□□□□ -1.69
NUP116YMR047C SPC19Q03954 165 aa4.52□□□□□ -1.69
NUP116YMR047C MSC3Q05812 728 aa4.52□□□□□ -1.69
NUP116YMR047C BCP1Q06338 283 aa4.52□□□□□ -1.69
NUP116YMR047C TY1A-GR1Q12085 440 aa4.52□□□□□ -1.69
NUP116YMR047C TMS1Q12116 473 aa4.52□□□□□ -1.69
NUP116YMR047C SPE4Q12455 300 aa4.52□□□□□ -1.69
NUP116YMR047C TY1A-PR3Q6Q5H1 440 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C TY1A-OLQ92392 440 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C Q0010Q9ZZX9 128 aa4.52□□□□□ -1.69
NUP116YMR047C RPS4AP0CX35 261 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C RPS4BP0CX36 261 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C UNG1P12887 359 aa4.52□□□□□ -1.69
NUP116YMR047C FBA1P14540 359 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C SGV1P23293 657 aaKnown RBP4.52□□□□□ -1.69
NUP116YMR047C SOP4P39543 234 aaPredicted RBP4.52□□□□□ -1.69
NUP116YMR047C TIS11P47977 285 aa4.52□□□□□ -1.69
NUP116YMR047C TPN1P53099 579 aa4.52□□□□□ -1.69
NUP116YMR047C FHN1P53279 174 aa4.52□□□□□ -1.69
NUP116YMR047C MEP3P53390 489 aa4.52□□□□□ -1.69
NUP116YMR047C YNL260CP53846 198 aa4.52□□□□□ -1.69
NUP116YMR047C YNL184CP53876 108 aa4.52□□□□□ -1.69
NUP116YMR047C TPP1Q03796 238 aa4.52□□□□□ -1.69
NUP116YMR047C HRD1Q08109 551 aa4.52□□□□□ -1.69
NUP116YMR047C YPL066WQ12194 479 aa4.52□□□□□ -1.69
NUP116YMR047C RFA1P22336 621 aaKnown RBP4.51□□□□□ -1.69
NUP116YMR047C RNA15P25299 296 aaPredicted RBP4.51□□□□□ -1.69
Retrieved 100 of 5,963 RNA–protein pairs in 24.9 ms