RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	CHL4	P38907	458 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	MLH1	P38920	769 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	HYR1	P40581	163 aa	Known RBP	4.7	□□□□□ -1.66
SEC39	YLR440C	PYK2	P52489	506 aa	Known RBP	4.7	□□□□□ -1.66
SEC39	YLR440C	YNL260C	P53846	198 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	CAB5	Q03941	241 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	DLT1	Q04216	342 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	TVP18	Q04767	167 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	CYK3	Q07533	885 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	ATX2	Q12067	313 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	UPC2	Q12151	913 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	RRD2	Q12461	358 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	SFG1	Q12507	346 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	SAS5	Q99314	248 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	DUR1,2	P32528	1835 aa	Known RBP	4.7	□□□□□ -1.66
SEC39	YLR440C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.7	□□□□□ -1.66	not detected
SEC39	YLR440C	YCR015C	P25616	317 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	PEX4	P29340	183 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	PHD1	P36093	366 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	MIC12	P38341	106 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	ATG7	P38862	630 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	PAC2	P39937	518 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	LAS21	P40367	830 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	HXT9	P40885	567 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	AIF1	P52923	378 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	TAD1	P53065	400 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	VPS73	P53142	486 aa	Known RBP	4.7	□□□□□ -1.66
SEC39	YLR440C	YNL184C	P53876	108 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	ASI2	P53895	289 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	HXT11	P54862	567 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	TMN2	Q04562	672 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	INM2	Q05533	292 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	TPO3	Q06451	622 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	SCP1	Q08873	200 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	FSF1	Q12029	327 aa	Known RBP	4.7	□□□□□ -1.66
SEC39	YLR440C	FCF2	Q12035	217 aa	Predicted RBP	4.7	□□□□□ -1.66
SEC39	YLR440C	NDJ1	Q12366	352 aa		4.7	□□□□□ -1.66
SEC39	YLR440C	MEX67	Q99257	599 aa	Known RBP	4.7	□□□□□ -1.66
SEC39	YLR440C	ADH2	P00331	348 aa	Known RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	COX2	P00410	251 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	GPM1	P00950	247 aa	Known RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	PPR1	P07272	904 aa	Predicted RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	RPS19A	P07280	144 aa	Known RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	RPS19B	P07281	144 aa	Predicted RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	NUP1	P20676	1076 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	YSP3	P25036	478 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	CYS3	P31373	394 aa	Known RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	TMT1	P32643	299 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	MRPL24	P36525	258 aa	Predicted RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	SOL2	P37262	315 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	MRPL16	P38064	232 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	FLR1	P38124	548 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	CRG1	P38892	291 aa	RIP-Chip data	4.69	□□□□□ -1.66	not detected
SEC39	YLR440C	YAR028W	P39548	234 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	COG3	P40094	801 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	YIR035C	P40579	254 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	YJR011C	P47086	261 aa	Predicted RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	RPS12	P48589	143 aa	Known RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	EFM6	P53970	246 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	ODC1	Q03028	310 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	MRX9	Q07349	420 aa	Known RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	TPO4	Q12256	659 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	RRI1	Q12468	440 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	PHO2	P07269	559 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	PDA1	P16387	420 aa	Known RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	GSY2	P27472	705 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	ECT1	P33412	323 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	WBP1	P33767	430 aa	Known RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	CBP4	P37267	147 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	ECM21	P38167	1117 aa	Known RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	RCK1	P38622	512 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	GIC1	P38785	314 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	IME4	P41833	600 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	YFL054C	P43549	646 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	PMT4	P46971	762 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	YGR079W	P53249	370 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	GTF1	P53260	183 aa	Predicted RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	APS2	Q00381	147 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	YPL014W	Q02606	381 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	YPL077C	Q02831	240 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	SIZ1	Q04195	904 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	AAD4	Q07747	329 aa		4.69	□□□□□ -1.66
SEC39	YLR440C	USB1	Q12208	290 aa	Known RBP	4.69	□□□□□ -1.66
SEC39	YLR440C	TPI1	P00942	248 aa	Known RBP	4.68	□□□□□ -1.66
SEC39	YLR440C	RPS16A	P0CX51	143 aa	Known RBP	4.68	□□□□□ -1.66
SEC39	YLR440C	RPS16B	P0CX52	143 aa	Known RBP	4.68	□□□□□ -1.66
SEC39	YLR440C	CUP2	P15315	225 aa		4.68	□□□□□ -1.66
SEC39	YLR440C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.68	□□□□□ -1.66	not detected
SEC39	YLR440C	EHD3	P28817	500 aa		4.68	□□□□□ -1.66
SEC39	YLR440C	OCH1	P31755	480 aa		4.68	□□□□□ -1.66
SEC39	YLR440C	NTH1	P32356	751 aa		4.68	□□□□□ -1.66
SEC39	YLR440C	CYS4	P32582	507 aa	Known RBP	4.68	□□□□□ -1.66
SEC39	YLR440C	UGP1	P32861	499 aa	Known RBP	4.68	□□□□□ -1.66
SEC39	YLR440C	IXR1	P33417	597 aa		4.68	□□□□□ -1.66
SEC39	YLR440C	YHR127W	P38833	243 aa	Known RBP	4.68	□□□□□ -1.66
SEC39	YLR440C	ALP1	P38971	573 aa		4.68	□□□□□ -1.66
SEC39	YLR440C	RRG9	P40156	214 aa		4.68	□□□□□ -1.66
SEC39	YLR440C	YNL194C	P40169	301 aa		4.68	□□□□□ -1.66
SEC39	YLR440C	DPB11	P47027	764 aa	Predicted RBP	4.68	□□□□□ -1.66
SEC39	YLR440C	COS12	P53053	380 aa		4.68	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 16.3 ms