RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	FEX2	Q08991	375 aa		4.18	□□□□□ -1.74
UBI4	YLL039C	YTM1	Q12024	460 aa	Predicted RBP	4.18	□□□□□ -1.74
UBI4	YLL039C	YDL109C	Q12103	647 aa		4.18	□□□□□ -1.74
UBI4	YLL039C	MED4	Q12343	284 aa		4.18	□□□□□ -1.74
UBI4	YLL039C	DCP1	Q12517	231 aa	Predicted RBP	4.18	□□□□□ -1.74
UBI4	YLL039C	ENA5	Q12691	1091 aa		4.18	□□□□□ -1.74
UBI4	YLL039C	YKL033W-A	Q86ZR7	236 aa		4.18	□□□□□ -1.74
UBI4	YLL039C	THP2	O13539	261 aa	Known RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	YPT1	P01123	206 aa	Known RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	UGA1	P17649	471 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	RPB5	P20434	215 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	HXT2	P23585	541 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	LDB16	P25587	256 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	PMT2	P31382	759 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	ASF2	P32448	525 aa	Predicted RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	LYP1	P32487	611 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	PRP21	P32524	280 aa	Predicted RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	CYS4	P32582	507 aa	Known RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	PTR2	P32901	601 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	MSN2	P33748	704 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	VPS51	P36116	164 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	PDX3	P38075	228 aa	Known RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	YBR139W	P38109	508 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	MOH1	P38191	138 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	RCK1	P38622	512 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	FAD1	P38913	306 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	MNN9	P39107	395 aa	Known RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	VPS52	P39904	641 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	LYS12	P40495	371 aa	Known RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	PAC10	P48363	199 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	HSV2	P50079	448 aa	Predicted RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	UBC9	P50623	157 aa	Predicted RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	SLD3	P53135	668 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	LCL3	P53153	274 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	CDH1	P53197	566 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	YGR067C	P53243	804 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	DID2	P69771	204 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	OAZ1	Q02803	292 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	PFA5	Q03289	374 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	YMR310C	Q04867	317 aa	Predicted RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	NEJ1	Q06148	342 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	MLC2	Q06580	163 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	YPR174C	Q06616	221 aa	Predicted RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	DTD1	Q07648	150 aa	Known RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	MFG1	Q07684	458 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	LOT6	Q07923	191 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	YLR036C	Q07986	203 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	YNG1	Q08465	219 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	RTC5	Q12108	567 aa	Known RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	DBP10	Q12389	995 aa	Known RBP	4.17	□□□□□ -1.74
UBI4	YLL039C	TRM10	Q12400	293 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	LAS17	Q12446	633 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	CMC2	Q3E7A4	109 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	YOR019W	Q99248	730 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	MEC1	P38111	2368 aa		4.17	□□□□□ -1.74
UBI4	YLL039C	GPH1	P06738	902 aa	Known RBP	4.16	□□□□□ -1.74
UBI4	YLL039C	AAC3	P18238	307 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	GIT1	P25346	518 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	STP22	P25604	385 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	ARC19	P33204	171 aa	Known RBP	4.16	□□□□□ -1.74
UBI4	YLL039C	SPC34	P36131	295 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	TDP1	P38319	544 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	APE4	P38821	490 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	YHR177W	P38867	453 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	EGD2	P38879	174 aa	Known RBP	4.16	□□□□□ -1.74
UBI4	YLL039C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
UBI4	YLL039C	RCY1	P39531	840 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	ECM10	P39987	644 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	SWM2	P40342	146 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	YJL068C	P40363	299 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	UTP25	P40498	721 aa	Known RBP	4.16	□□□□□ -1.74
UBI4	YLL039C	UBC12	P52491	188 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	TWF1	P53250	332 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	YNL033W	P53964	284 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	YNL019C	P53975	284 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	SKI8	Q02793	397 aa	Predicted RBP	4.16	□□□□□ -1.74
UBI4	YLL039C	UGO1	Q03327	502 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	RSN1	Q03516	953 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	MDM30	Q05930	598 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	ASA1	Q06822	443 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	YPR091C	Q06833	770 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	FRE5	Q08908	694 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	FDH1	Q08911	376 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	ULA1	Q12059	462 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	YPL066W	Q12194	479 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	YPR1	Q12458	312 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	SKS1	Q12505	502 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	TMA17	Q12513	150 aa		4.16	□□□□□ -1.74
UBI4	YLL039C	TMA7	Q3E764	64 aa	Known RBP	4.16	□□□□□ -1.74
UBI4	YLL039C	YGL041W-A	P0C5N3	154 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	DSF1	P0CX08	502 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	YNR073C	P0CX09	502 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	GAL3	P13045	520 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	GLK1	P17709	500 aa	Known RBP	4.15	□□□□□ -1.75
UBI4	YLL039C	PTP2	P29461	750 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	NGG1	P32494	702 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	YBL010C	P32788	280 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	ORC2	P32833	620 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	PPQ1	P32945	549 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	PEX6	P33760	1030 aa		4.15	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 41.9 ms