RNA–Protein interactions for RNA: YHR170W

NMD3, Transcript of Protein involved in nuclear export of the large ribosomal subunit, yeast

Gene NMD3, Length 1,557 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NMD3	YHR170W	YDR262W	Q12331	272 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	SEC39	Q12745	709 aa		4.23	□□□□□ -1.73
NMD3	YHR170W	MF(ALPHA)1	P01149	165 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	RPL1A	P0CX43	217 aa	Known RBP	4.22	□□□□□ -1.73
NMD3	YHR170W	RPL1B	P0CX44	217 aa	Known RBP	4.22	□□□□□ -1.73
NMD3	YHR170W	GRR1	P24814	1151 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	CHA1	P25379	360 aa	Known RBP	4.22	□□□□□ -1.73
NMD3	YHR170W	ERV1	P27882	189 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	YIM1	P28625	365 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	PRE4	P30657	266 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	NTH1	P32356	751 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	MTC7	P32633	139 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	SUI1	P32911	108 aa	Known RBP	4.22	□□□□□ -1.73
NMD3	YHR170W	TIF3	P34167	436 aa	Known RBP	4.22	□□□□□ -1.73
NMD3	YHR170W	LOT5	P34234	306 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	TUL1	P36096	758 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	UTH1	P36135	365 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	ZTA1	P38230	334 aa	Known RBP	4.22	□□□□□ -1.73
NMD3	YHR170W	TDA11	P38854	504 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	MNL1	P38888	796 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	YIL077C	P40508	320 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	NAS2	P40555	220 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	CAK1	P43568	368 aa	Predicted RBP	4.22	□□□□□ -1.73
NMD3	YHR170W	STE24	P47154	453 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	PAC10	P48363	199 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	LCL3	P53153	274 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	YGR079W	P53249	370 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	STP3	Q05937	343 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	RSA1	Q08932	381 aa		4.22	□□□□□ -1.73
NMD3	YHR170W	PNO1	Q99216	274 aa	Known RBP	4.22	□□□□□ -1.73
NMD3	YHR170W	HFA1	P32874	2273 aa		4.21	□□□□□ -1.73
NMD3	YHR170W	IRA1	P18963	3092 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	STE7	P06784	515 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	APN1	P22936	367 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	ERG8	P24521	451 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	PTP1	P25044	335 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	MGR1	P25573	417 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	DAL80	P26343	269 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	AUR1	P36107	401 aa	Predicted RBP	4.21	□□□□□ -1.74
NMD3	YHR170W	SCO2	P38072	301 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	YBR285W	P38354	144 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	THO1	P40040	218 aa	Known RBP	4.21	□□□□□ -1.74
NMD3	YHR170W	PSA1	P41940	361 aa	Known RBP	4.21	□□□□□ -1.74
NMD3	YHR170W	FET5	P43561	622 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	TOM22	P49334	152 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	GLO1	P50107	326 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	SYF2	P53277	215 aa	Predicted RBP	4.21	□□□□□ -1.74
NMD3	YHR170W	ERV25	P54837	211 aa	Known RBP	4.21	□□□□□ -1.74
NMD3	YHR170W	RHO4	Q00246	291 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	SPO77	Q06134	477 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	DBP9	Q06218	594 aa	Known RBP	4.21	□□□□□ -1.74
NMD3	YHR170W	VIK1	Q12045	647 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	PNS1	Q12412	539 aa		4.21	□□□□□ -1.74
NMD3	YHR170W	BRR2	P32639	2163 aa	Known RBP	4.21	□□□□□ -1.74
NMD3	YHR170W	FAS1	P07149	2051 aa	Known RBP	4.2	□□□□□ -1.74
NMD3	YHR170W	CBS2	P14905	389 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	RPS1B	P23248	255 aa	Known RBP	4.2	□□□□□ -1.74
NMD3	YHR170W	TAH1	P25638	111 aa	Predicted RBP	4.2	□□□□□ -1.74
NMD3	YHR170W	CWP1	P28319	239 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	APE2	P32454	952 aa	Known RBP	4.2	□□□□□ -1.74
NMD3	YHR170W	MOH1	P38191	138 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	COG3	P40094	801 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	CFD1	P40558	293 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	IBA57	P47158	497 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	SNF12	P53628	566 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	SMP3	Q04174	516 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	NDL1	Q06568	189 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	YPR172W	Q06608	200 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	LUC7	Q07508	261 aa	Predicted RBP	4.2	□□□□□ -1.74
NMD3	YHR170W	PML1	Q07930	204 aa	Predicted RBP	4.2	□□□□□ -1.74
NMD3	YHR170W	BSC1	Q12140	328 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	ACF2	Q12168	779 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	LAG2	Q92325	660 aa		4.2	□□□□□ -1.74
NMD3	YHR170W	GPH1	P06738	902 aa	Known RBP	4.19	□□□□□ -1.74
NMD3	YHR170W	PUT2	P07275	575 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	PET122	P10355	254 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	ZWF1	P11412	505 aa	Known RBP	4.19	□□□□□ -1.74
NMD3	YHR170W	PRP28	P23394	588 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	RHB1	P25378	209 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	PTR2	P32901	601 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	VPS17	P32913	551 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	SUR1	P33300	382 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	AGX1	P43567	385 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	ALK1	P43633	760 aa	Known RBP	4.19	□□□□□ -1.74
NMD3	YHR170W	EMC2	P47133	292 aa	Known RBP	4.19	□□□□□ -1.74
NMD3	YHR170W	PRM8	P53174	237 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	MTQ1	P53944	314 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	TPS1	Q00764	495 aa	Known RBP	4.19	□□□□□ -1.74
NMD3	YHR170W	GRX5	Q02784	150 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	RRN5	Q02983	363 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	SPO19	Q03029	223 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	RSC9	Q03124	581 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	RRT8	Q08219	342 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	GLE1	Q12315	538 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	PET9	P18239	318 aa	Known RBP	4.19	□□□□□ -1.74
NMD3	YHR170W	MRPS28	P21771	286 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	CPR2	P23285	205 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	RAD51	P25454	400 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	MXR2	P25566	168 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 18.8 ms