RNA–Protein interactions for RNA: YHR003C

TCD1, Transcript of tRNA threonylcarbamoyladenosine dehydratase, yeast

Gene TCD1, Length 1,290 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TCD1	YHR003C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	2.61	□□□□□ -1.99	not detected
TCD1	YHR003C	RPM2	Q02773	1202 aa		2.61	□□□□□ -1.99
TCD1	YHR003C	RLI1	Q03195	608 aa	Known RBP	2.61	□□□□□ -1.99
TCD1	YHR003C	YMR209C	Q03648	457 aa		2.61	□□□□□ -1.99
TCD1	YHR003C	KRE28	Q04431	385 aa		2.61	□□□□□ -1.99
TCD1	YHR003C	GIM5	Q04493	163 aa		2.61	□□□□□ -1.99
TCD1	YHR003C	AIM33	Q04516	312 aa		2.61	□□□□□ -1.99
TCD1	YHR003C	YMR226C	Q05016	267 aa	Known RBP	2.61	□□□□□ -1.99
TCD1	YHR003C	FUS2	Q05670	677 aa		2.61	□□□□□ -1.99
TCD1	YHR003C	HCR1	Q05775	265 aa	Known RBP	2.61	□□□□□ -1.99
TCD1	YHR003C	SDO1	Q07953	250 aa	Known RBP	2.61	□□□□□ -1.99
TCD1	YHR003C	SLF1	Q12034	447 aa	Known RBP	2.61	□□□□□ -1.99
TCD1	YHR003C	SRO7	Q12038	1033 aa		2.61	□□□□□ -1.99
TCD1	YHR003C	RGS2	Q99188	309 aa		2.61	□□□□□ -1.99
TCD1	YHR003C	DST1	P07273	309 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	MATALPHA1	P0CY06	175 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	HMLALPHA1	P0CY07	175 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	RPL24B	P24000	155 aa	Known RBP	2.6	□□□□□ -1.99
TCD1	YHR003C	RRT12	P25381	491 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	PUT3	P25502	979 aa	Predicted RBP	2.6	□□□□□ -1.99
TCD1	YHR003C	MXR2	P25566	168 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	CSM1	P25651	190 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	CPR3	P25719	182 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	PPA2	P28239	310 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	PRR1	P28708	518 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	DEG1	P31115	442 aa	Known RBP	2.6	□□□□□ -1.99
TCD1	YHR003C	VMA5	P31412	392 aa	Known RBP	2.6	□□□□□ -1.99
TCD1	YHR003C	GCG1	P32656	232 aa	Known RBP	2.6	□□□□□ -1.99
TCD1	YHR003C	TOA2	P32774	122 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	VAM7	P32912	316 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	YKL162C	P36052	402 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	HIS2	P38635	335 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	YER079W	P40052	210 aa	Known RBP	2.6	□□□□□ -1.99
TCD1	YHR003C	SHO1	P40073	367 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	POP1	P41812	875 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	HIT1	P46973	164 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	SAM50	P53969	484 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	HXT11	P54862	567 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	MMT1	Q03218	510 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	MYO5	Q04439	1219 aa	Known RBP	2.6	□□□□□ -1.99
TCD1	YHR003C	LDS2	Q08218	356 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	THI20	Q08224	551 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	YOR029W	Q12243	111 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	YPR1	Q12458	312 aa		2.6	□□□□□ -1.99
TCD1	YHR003C	ADH2	P00331	348 aa	Known RBP	2.59	□□□□□ -1.99
TCD1	YHR003C	HIS4	P00815	799 aa	Known RBP	2.59	□□□□□ -1.99
TCD1	YHR003C	OPI3	P05375	206 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	ARF1	P11076	181 aa	Known RBP	2.59	□□□□□ -1.99
TCD1	YHR003C	PRP16	P15938	1071 aa	Predicted RBP	2.59	□□□□□ -1.99
TCD1	YHR003C	RPO26	P20435	155 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	ACB1	P31787	87 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	UTR4	P32626	227 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	SKN1	P33336	771 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	MRPS5	P33759	307 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	ECM15	P35195	104 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	DOA1	P36037	715 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	MRPL10	P36520	322 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	CBP4	P37267	147 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	LDB7	P38210	180 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	MMS21	P38632	267 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	BIG1	P38813	335 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	RFC4	P40339	323 aa	Known RBP	2.59	□□□□□ -1.99
TCD1	YHR003C	RMR1	P53060	241 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	BUD32	P53323	261 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	MKC7	P53379	596 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	SMM1	P53720	384 aa	Known RBP	2.59	□□□□□ -1.99
TCD1	YHR003C	TRM112	P53738	135 aa	Predicted RBP	2.59	□□□□□ -1.99
TCD1	YHR003C	YIF1	P53845	314 aa	Known RBP	2.59	□□□□□ -1.99
TCD1	YHR003C	DUG3	P53871	357 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	ALG11	P53954	548 aa	Known RBP	2.59	□□□□□ -1.99
TCD1	YHR003C	GIP3	Q03016	1276 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	RVB1	Q03940	463 aa	Known RBP	2.59	□□□□□ -1.99
TCD1	YHR003C	YDR387C	Q04162	555 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	SPO77	Q06134	477 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	BER1	Q06688	274 aa	Known RBP	2.59	□□□□□ -1.99
TCD1	YHR003C	SKI7	Q08491	747 aa	Predicted RBP	2.59	□□□□□ -1.99
TCD1	YHR003C	YLL056C	Q12177	298 aa		2.59	□□□□□ -1.99
TCD1	YHR003C	SSK22	P25390	1331 aa	Predicted RBP	2.59	□□□□□ -2
TCD1	YHR003C	RPO41	P13433	1351 aa	Known RBP	2.59	□□□□□ -2
TCD1	YHR003C	UTP20	P35194	2493 aa	Known RBP	2.59	□□□□□ -2
TCD1	YHR003C	RPL15A	P05748	204 aa	Known RBP	2.58	□□□□□ -2
TCD1	YHR003C	CDC33	P07260	213 aa	Known RBP	2.58	□□□□□ -2
TCD1	YHR003C	RPL27A	P0C2H6	136 aa	Known RBP	2.58	□□□□□ -2
TCD1	YHR003C	RPL27B	P0C2H7	136 aa	Known RBP	2.58	□□□□□ -2
TCD1	YHR003C	IMA3	P0CW40	589 aa		2.58	□□□□□ -2
TCD1	YHR003C	IMA4	P0CW41	589 aa		2.58	□□□□□ -2
TCD1	YHR003C	APA2	P22108	325 aa		2.58	□□□□□ -2
TCD1	YHR003C	YSR3	P23501	404 aa		2.58	□□□□□ -2
TCD1	YHR003C	SLM5	P25345	492 aa	Known RBP	2.58	□□□□□ -2
TCD1	YHR003C	RPS2	P25443	254 aa	Known RBP	2.58	□□□□□ -2
TCD1	YHR003C	DCC1	P25559	380 aa		2.58	□□□□□ -2
TCD1	YHR003C	PEX3	P28795	441 aa		2.58	□□□□□ -2
TCD1	YHR003C	ATP7	P30902	174 aa		2.58	□□□□□ -2
TCD1	YHR003C	ZUO1	P32527	433 aa	Known RBP	2.58	□□□□□ -2
TCD1	YHR003C	PTR2	P32901	601 aa		2.58	□□□□□ -2
TCD1	YHR003C	MNS1	P32906	549 aa		2.58	□□□□□ -2
TCD1	YHR003C	LOS1	P33418	1100 aa	Predicted RBP	2.58	□□□□□ -2
TCD1	YHR003C	VPS51	P36116	164 aa		2.58	□□□□□ -2
TCD1	YHR003C	PFS1	P38872	237 aa		2.58	□□□□□ -2
TCD1	YHR003C	KRE9	P39005	276 aa		2.58	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 10.8 ms