RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	RAX1	Q08760	435 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	SPO24	Q3E752	67 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	VPS63	O13549	108 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	SSC1	P0CS90	654 aa	Known RBP	4.23	□□□□□ -1.73
CAF16	YFL028C	PET123	P17558	318 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	YEF1	P32622	495 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	YBR139W	P38109	508 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	RCK2	P38623	610 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	SSO2	P39926	295 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	JLP2	P40206	208 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	WWM1	P43582	211 aa	Known RBP	4.23	□□□□□ -1.73
CAF16	YFL028C	KAP114	P53067	1004 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	YGL114W	P53134	725 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	RRN9	P53437	365 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	TAF9	Q05027	157 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	APC5	Q08683	685 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	YPQ1	Q12010	308 aa		4.23	□□□□□ -1.73
CAF16	YFL028C	AIM45	Q12480	344 aa	Known RBP	4.23	□□□□□ -1.73
CAF16	YFL028C	FAB1	P34756	2278 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	CBP2	P03874	630 aa	Predicted RBP	4.22	□□□□□ -1.73
CAF16	YFL028C	HEM15	P16622	393 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	CKI1	P20485	582 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	PEX34	P25584	144 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	SWC5	P38326	303 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	BTT1	P40314	149 aa	Predicted RBP	4.22	□□□□□ -1.73
CAF16	YFL028C	YIL054W	P40524	105 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	SPG5	P42933	373 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	YFR018C	P43599	363 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	YHC3	P47040	408 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	YDL186W	P48568	277 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	ELP3	Q02908	557 aa	Known RBP	4.22	□□□□□ -1.73
CAF16	YFL028C	SMP3	Q04174	516 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	SPG3	Q04398	127 aa	Predicted RBP	4.22	□□□□□ -1.73
CAF16	YFL028C	SML1	Q04964	104 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	VAC14	Q06708	880 aa		4.22	□□□□□ -1.73
CAF16	YFL028C	YLR462W	O13556	202 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	RIP-Chip
CAF16	YFL028C	GAL3	P13045	520 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	GRR1	P24814	1151 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	DAL80	P26343	269 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	SRB4	P32569	687 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	TOA2	P32774	122 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	YPT53	P36019	220 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	ECM13	P38195	257 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	YHL049C	P38722	271 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	PRP39	P39682	629 aa	Known RBP	4.21	□□□□□ -1.74
CAF16	YFL028C	LCP5	P40079	357 aa	Predicted RBP	4.21	□□□□□ -1.74
CAF16	YFL028C	AIM20	P40451	204 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	YFL064C	P43540	174 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	MSO1	P53604	210 aa	Known RBP	4.21	□□□□□ -1.74
CAF16	YFL028C	KTR6	P54070	446 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	YMR114C	Q04471	368 aa	Known RBP	4.21	□□□□□ -1.74
CAF16	YFL028C	YLR108C	Q12259	485 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	PFK27	Q12471	397 aa	Predicted RBP	4.21	□□□□□ -1.74
CAF16	YFL028C	YBL111C	Q3E7Y5	667 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	YOR338W	Q99326	363 aa		4.21	□□□□□ -1.74
CAF16	YFL028C	RAD10	P06838	210 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	YLL053C	P0CD98	152 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	GCD2	P12754	651 aa	Predicted RBP	4.2	□□□□□ -1.74
CAF16	YFL028C	MET16	P18408	261 aa	Predicted RBP	4.2	□□□□□ -1.74
CAF16	YFL028C	COY1	P34237	679 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	GPX2	P38143	162 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	GEP4	P38812	185 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	END3	P39013	349 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	YIL067C	P40514	678 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	PEX31	P53203	462 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	YNL040W	P53960	456 aa	Predicted RBP	4.2	□□□□□ -1.74
CAF16	YFL028C	ERV25	P54837	211 aa	Known RBP	4.2	□□□□□ -1.74
CAF16	YFL028C	STE23	Q06010	1027 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	KAP95	Q06142	861 aa	Known RBP	4.2	□□□□□ -1.74
CAF16	YFL028C	NDE2	Q07500	545 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	YOR387C	Q08910	206 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	PPT2	Q12036	173 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	YRM1	Q12340	786 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	IZH4	Q99393	312 aa		4.2	□□□□□ -1.74
CAF16	YFL028C	RPS16A	P0CX51	143 aa	Known RBP	4.19	□□□□□ -1.74
CAF16	YFL028C	RPS16B	P0CX52	143 aa	Known RBP	4.19	□□□□□ -1.74
CAF16	YFL028C	MRPL8	P22353	238 aa		4.19	□□□□□ -1.74
CAF16	YFL028C	SSE1	P32589	693 aa	Known RBP	4.19	□□□□□ -1.74
CAF16	YFL028C	MRPL40	P36534	297 aa		4.19	□□□□□ -1.74
CAF16	YFL028C	YHR122W	P38829	231 aa		4.19	□□□□□ -1.74
CAF16	YFL028C	COX14	P39103	70 aa		4.19	□□□□□ -1.74
CAF16	YFL028C	PRM9	P39551	298 aa		4.19	□□□□□ -1.74
CAF16	YFL028C	UFE1	P41834	346 aa		4.19	□□□□□ -1.74
CAF16	YFL028C	CWC22	P53333	577 aa	Known RBP	4.19	□□□□□ -1.74
CAF16	YFL028C	TRM112	P53738	135 aa	Predicted RBP	4.19	□□□□□ -1.74
CAF16	YFL028C	YNL247W	P53852	767 aa	Known RBP	4.19	□□□□□ -1.74
CAF16	YFL028C	NUP116	Q02630	1113 aa		4.19	□□□□□ -1.74
CAF16	YFL028C	HNT3	Q08702	217 aa		4.19	□□□□□ -1.74
CAF16	YFL028C	ICT1	Q12385	394 aa		4.19	□□□□□ -1.74
CAF16	YFL028C	BEM2	P39960	2167 aa	Known RBP	4.19	□□□□□ -1.74
CAF16	YFL028C	TRP1	P00912	224 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	DBP3	P20447	523 aa	Known RBP	4.18	□□□□□ -1.74
CAF16	YFL028C	CPR4	P25334	318 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	PET18	P25362	215 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	MEI4	P29467	408 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	PHA2	P32452	334 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	MNS1	P32906	549 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	ATG12	P38316	186 aa		4.18	□□□□□ -1.74
CAF16	YFL028C	URA8	P38627	578 aa	Predicted RBP	4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 105.3 ms