RNA–Protein interactions for RNA: YDR288W

NSE3, Transcript of Component of the SMC5-SMC6 complex, yeast

Gene NSE3, Length 912 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NSE3	YDR288W	SHE1	P38200	338 aa		3.6	□□□□□ -1.83
NSE3	YDR288W	SHE3	P38272	425 aa	Known RBP	3.6	□□□□□ -1.83
NSE3	YDR288W	FHL1	P39521	936 aa		3.6	□□□□□ -1.83
NSE3	YDR288W	AIM20	P40451	204 aa		3.6	□□□□□ -1.83
NSE3	YDR288W	RMI1	Q02685	241 aa		3.6	□□□□□ -1.83
NSE3	YDR288W	SLF1	Q12034	447 aa	Known RBP	3.6	□□□□□ -1.83
NSE3	YDR288W	MDY2	Q12285	212 aa		3.6	□□□□□ -1.83
NSE3	YDR288W	STE2	D6VTK4	431 aa		3.59	□□□□□ -1.83
NSE3	YDR288W	VPS63	O13549	108 aa		3.59	□□□□□ -1.83
NSE3	YDR288W	PET18	P25362	215 aa		3.59	□□□□□ -1.83
NSE3	YDR288W	YPS1	P32329	569 aa		3.59	□□□□□ -1.83
NSE3	YDR288W	SPS19	P32573	292 aa	Known RBP	3.59	□□□□□ -1.83
NSE3	YDR288W	KTI12	P34253	313 aa	Known RBP	3.59	□□□□□ -1.83
NSE3	YDR288W	YDR089W	P38966	869 aa		3.59	□□□□□ -1.83
NSE3	YDR288W	UTP25	P40498	721 aa	Known RBP	3.59	□□□□□ -1.83
NSE3	YDR288W	YFL012W	P43580	148 aa		3.59	□□□□□ -1.83
NSE3	YDR288W	YGR018C	P53211	109 aa		3.59	□□□□□ -1.83
NSE3	YDR288W	ABZ2	Q03266	374 aa		3.59	□□□□□ -1.83
NSE3	YDR288W	CAB5	Q03941	241 aa		3.59	□□□□□ -1.83
NSE3	YDR288W	VPS20	Q04272	221 aa		3.59	□□□□□ -1.83
NSE3	YDR288W	TAF10	Q12030	206 aa		3.59	□□□□□ -1.83
NSE3	YDR288W	RPN6	Q12377	434 aa		3.59	□□□□□ -1.83
NSE3	YDR288W	CBP2	P03874	630 aa	Predicted RBP	3.58	□□□□□ -1.84
NSE3	YDR288W	SWC5	P38326	303 aa		3.58	□□□□□ -1.84
NSE3	YDR288W	SMF2	P38778	549 aa		3.58	□□□□□ -1.84
NSE3	YDR288W	PES4	P39684	611 aa		3.58	□□□□□ -1.84
NSE3	YDR288W	YER184C	P39961	794 aa		3.58	□□□□□ -1.84
NSE3	YDR288W	YFR018C	P43599	363 aa		3.58	□□□□□ -1.84
NSE3	YDR288W	STE23	Q06010	1027 aa		3.58	□□□□□ -1.84
NSE3	YDR288W	MMT2	Q08970	484 aa		3.58	□□□□□ -1.84
NSE3	YDR288W	MHP1	P43638	1398 aa		3.58	□□□□□ -1.84
NSE3	YDR288W	SMP1	P38128	452 aa		3.57	□□□□□ -1.84
NSE3	YDR288W	GGC1	P38988	300 aa		3.57	□□□□□ -1.84
NSE3	YDR288W	PRO2	P54885	456 aa	Known RBP	3.57	□□□□□ -1.84
NSE3	YDR288W	SAM4	Q08985	325 aa	Known RBP	3.57	□□□□□ -1.84
NSE3	YDR288W	YPR1	Q12458	312 aa		3.57	□□□□□ -1.84
NSE3	YDR288W	RPS19A	P07280	144 aa	Known RBP	3.56	□□□□□ -1.84
NSE3	YDR288W	RPS19B	P07281	144 aa	Predicted RBP	3.56	□□□□□ -1.84
NSE3	YDR288W	GCD2	P12754	651 aa	Predicted RBP	3.56	□□□□□ -1.84
NSE3	YDR288W	PUT4	P15380	627 aa		3.56	□□□□□ -1.84
NSE3	YDR288W	RRT13	P40042	185 aa		3.56	□□□□□ -1.84
NSE3	YDR288W	FLC3	P53121	802 aa		3.56	□□□□□ -1.84
NSE3	YDR288W	EFM1	P38732	585 aa		3.55	□□□□□ -1.84
NSE3	YDR288W	CHL4	P38907	458 aa		3.55	□□□□□ -1.84
NSE3	YDR288W	IRC4	Q03036	179 aa		3.55	□□□□□ -1.84
NSE3	YDR288W	API2	Q04413	109 aa		3.55	□□□□□ -1.84
NSE3	YDR288W	DTD1	Q07648	150 aa	Known RBP	3.55	□□□□□ -1.84
NSE3	YDR288W	RPN8	Q08723	338 aa	Known RBP	3.55	□□□□□ -1.84
NSE3	YDR288W	REP1	P03871	373 aa		3.54	□□□□□ -1.84
NSE3	YDR288W	SPS100	P13130	326 aa		3.54	□□□□□ -1.84
NSE3	YDR288W	ERD1	P16151	362 aa		3.54	□□□□□ -1.84
NSE3	YDR288W	BUD2	P33314	1104 aa		3.54	□□□□□ -1.84
NSE3	YDR288W	VOA1	P53262	265 aa		3.54	□□□□□ -1.84
NSE3	YDR288W	YOL029C	Q08187	201 aa		3.54	□□□□□ -1.84
NSE3	YDR288W	TPI1	P00942	248 aa	Known RBP	3.53	□□□□□ -1.84
NSE3	YDR288W	SAR1	P20606	190 aa	Known RBP	3.53	□□□□□ -1.84
NSE3	YDR288W	ZIP1	P31111	875 aa		3.53	□□□□□ -1.84
NSE3	YDR288W	ZRT1	P32804	376 aa		3.53	□□□□□ -1.84
NSE3	YDR288W	TAE1	P38340	232 aa		3.53	□□□□□ -1.84
NSE3	YDR288W	MNN9	P39107	395 aa	Known RBP	3.53	□□□□□ -1.84
NSE3	YDR288W	SCS7	Q03529	384 aa		3.53	□□□□□ -1.84
NSE3	YDR288W	MRX9	Q07349	420 aa	Known RBP	3.53	□□□□□ -1.84
NSE3	YDR288W	RDL2	Q08742	149 aa	Known RBP	3.53	□□□□□ -1.84
NSE3	YDR288W	PAA1	Q12447	191 aa	Known RBP	3.53	□□□□□ -1.84
NSE3	YDR288W	FET3	P38993	636 aa		3.52	□□□□□ -1.85
NSE3	YDR288W	INA22	P40576	216 aa		3.52	□□□□□ -1.85
NSE3	YDR288W	YPL080C	Q02826	108 aa		3.52	□□□□□ -1.85
NSE3	YDR288W	FAR10	Q06001	478 aa		3.52	□□□□□ -1.85
NSE3	YDR288W	TIR4	Q12218	487 aa	Predicted RBP	3.52	□□□□□ -1.85
NSE3	YDR288W	RAX2	Q12465	1220 aa		3.52	□□□□□ -1.85
NSE3	YDR288W	PRM4	Q12498	284 aa		3.52	□□□□□ -1.85
NSE3	YDR288W	YBL111C	Q3E7Y5	667 aa		3.52	□□□□□ -1.85
NSE3	YDR288W	CAR2	P07991	424 aa	Known RBP	3.51	□□□□□ -1.85
NSE3	YDR288W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	3.51	□□□□□ -1.85	not detected
NSE3	YDR288W	DTR1	P38125	572 aa		3.51	□□□□□ -1.85
NSE3	YDR288W	COQ5	P49017	307 aa		3.51	□□□□□ -1.85
NSE3	YDR288W	RIB4	P50861	169 aa	Predicted RBP	3.51	□□□□□ -1.85
NSE3	YDR288W	SED5	Q01590	340 aa		3.51	□□□□□ -1.85
NSE3	YDR288W	UTP15	Q04305	513 aa	Known RBP	3.51	□□□□□ -1.85
NSE3	YDR288W	CUR1	Q06469	252 aa		3.51	□□□□□ -1.85
NSE3	YDR288W	PBP4	Q07362	185 aa	Known RBP	3.51	□□□□□ -1.85
NSE3	YDR288W	YAL067W-A	Q8TGK6	75 aa		3.51	□□□□□ -1.85
NSE3	YDR288W	SAL1	D6W196	494 aa		3.5	□□□□□ -1.85
NSE3	YDR288W	YKL162C	P36052	402 aa		3.5	□□□□□ -1.85
NSE3	YDR288W	YHR035W	P38769	630 aa		3.5	□□□□□ -1.85
NSE3	YDR288W	DBP6	P53734	629 aa	Known RBP	3.5	□□□□□ -1.85
NSE3	YDR288W	ARP5	P53946	755 aa		3.5	□□□□□ -1.85
NSE3	YDR288W	PFK27	Q12471	397 aa	Predicted RBP	3.5	□□□□□ -1.85
NSE3	YDR288W	DCP1	Q12517	231 aa	Predicted RBP	3.5	□□□□□ -1.85
NSE3	YDR288W	FLO11	P08640	1367 aa		3.5	□□□□□ -1.85
NSE3	YDR288W	RAD7	P06779	565 aa		3.49	□□□□□ -1.85
NSE3	YDR288W	INO2	P26798	304 aa		3.49	□□□□□ -1.85
NSE3	YDR288W	RAD23	P32628	398 aa	Known RBP	3.49	□□□□□ -1.85
NSE3	YDR288W	YMR262W	P38430	313 aa		3.49	□□□□□ -1.85
NSE3	YDR288W	DED81	P38707	554 aa	Known RBP	3.49	□□□□□ -1.85
NSE3	YDR288W	CTM1	P38818	585 aa		3.49	□□□□□ -1.85
NSE3	YDR288W	LOH1	P47055	219 aa		3.49	□□□□□ -1.85
NSE3	YDR288W	TPC1	P53257	314 aa		3.49	□□□□□ -1.85
NSE3	YDR288W	YGR266W	P53326	701 aa		3.49	□□□□□ -1.85
NSE3	YDR288W	INP1	Q03694	420 aa		3.49	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 25.3 ms