RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP42	YDR235W	LSG1	P53145	640 aa	Known RBP	0.48	□□□□□ -2.33
PRP42	YDR235W	CAX4	P53223	239 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	FMP48	P53233	369 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	RSC1	P53236	928 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	CSM3	Q04659	317 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	NAT4	Q04751	285 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	ECM19	Q06011	112 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	ARR1	Q06596	294 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	TAF10	Q12030	206 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	YPR063C	Q12160	140 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	YOR012W	Q12351	137 aa		0.48	□□□□□ -2.33
PRP42	YDR235W	PRP46	Q12417	451 aa	Predicted RBP	0.48	□□□□□ -2.33
PRP42	YDR235W	AIM45	Q12480	344 aa	Known RBP	0.48	□□□□□ -2.33
PRP42	YDR235W	TFB5	Q3E7C1	72 aa	Predicted RBP	0.48	□□□□□ -2.33
PRP42	YDR235W	THR4	P16120	514 aa	Known RBP	0.47	□□□□□ -2.33
PRP42	YDR235W	UTR1	P21373	530 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	UBA1	P22515	1024 aa	Known RBP	0.47	□□□□□ -2.33
PRP42	YDR235W	PHO84	P25297	587 aa	Known RBP	0.47	□□□□□ -2.33
PRP42	YDR235W	MXR2	P25566	168 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	MIG1	P27705	504 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	RPB9	P27999	122 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	FAA1	P30624	700 aa	Known RBP	0.47	□□□□□ -2.33
PRP42	YDR235W	RFT1	P38206	574 aa	Predicted RBP	0.47	□□□□□ -2.33
PRP42	YDR235W	IML3	P38265	245 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	GDT1	P38301	280 aa	Predicted RBP	0.47	□□□□□ -2.33
PRP42	YDR235W	RCK1	P38622	512 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	RRG9	P40156	214 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	SEC28	P40509	296 aa	Known RBP	0.47	□□□□□ -2.33
PRP42	YDR235W	MIC19	P43594	170 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	SHE4	P51534	789 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	YGL118C	P53132	145 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	YGL088W	P53151	121 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	TPC1	P53257	314 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	HCH1	P53834	153 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	YPL080C	Q02826	108 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	MIX17	Q03667	156 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	YMR310C	Q04867	317 aa	Predicted RBP	0.47	□□□□□ -2.33
PRP42	YDR235W	RPN8	Q08723	338 aa	Known RBP	0.47	□□□□□ -2.33
PRP42	YDR235W	RPN6	Q12377	434 aa		0.47	□□□□□ -2.33
PRP42	YDR235W	DFM1	Q12743	341 aa	Known RBP	0.47	□□□□□ -2.33
PRP42	YDR235W	RAD1	P06777	1100 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	MET2	P08465	486 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	SAG1	P20840	650 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	DAL81	P21657	970 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	INO2	P26798	304 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	ERG9	P29704	444 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	HMX1	P32339	317 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	KTI12	P34253	313 aa	Known RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	MYO3	P36006	1272 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	YKR032W	P36127	104 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	YSW1	P38280	609 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	MMS21	P38632	267 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	SMF2	P38778	549 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	SMC2	P38989	1170 aa	Known RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	DSE1	P40077	573 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	YCH1	P42937	148 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	ECO1	P43605	281 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	BUD13	P46947	266 aa	Predicted RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	PMT4	P46971	762 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	YHC3	P47040	408 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	YNR068C	P53754	272 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	RGM1	Q00453	211 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	UTP6	Q02354	440 aa	Known RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	YPL113C	Q02961	396 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	CSI1	Q04368	295 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	YDR114C	Q04597	100 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	GTO3	Q04806	366 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	YDR222W	Q04925	415 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	DIB1	Q06819	143 aa	Predicted RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	RLP24	Q07915	199 aa	Known RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	IES3	Q12345	250 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	BEM2	P39960	2167 aa	Known RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	HSP82	P02829	709 aa	Known RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	REP1	P03871	373 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	STE3	P06783	470 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	YLL053C	P0CD98	152 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	SPS100	P13130	326 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	DAP2	P18962	818 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	HXT2	P23585	541 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	RDS1	P25611	832 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	CIN8	P27895	1000 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	ARO4	P32449	370 aa	Known RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	YKL187C	P34231	750 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	DAD2	P36162	133 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	ATG12	P38316	186 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	ASP1	P38986	381 aa	Predicted RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	JEM1	P40358	645 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	SLM1	P40485	686 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	YFR045W	P43617	309 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	RPA34	P47006	233 aa	Predicted RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	HSH155	P49955	971 aa	Known RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	NBP1	P52919	319 aa	Predicted RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	SDS23	P53172	527 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	EOS1	P53938	366 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	SPH1	Q06160	661 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	DXO1	Q06349	442 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	CDD1	Q06549	142 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	MIM1	Q08176	113 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	CLP1	Q08685	445 aa	Predicted RBP	0.46	□□□□□ -2.34
PRP42	YDR235W	YPL264C	Q08980	353 aa		0.46	□□□□□ -2.34

Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms