RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C IRC10Q08118 586 aa3.88□□□□□ -1.79
CDC9YDL164C MED7Q08278 222 aa3.88□□□□□ -1.79
CDC9YDL164C GPM2Q12008 311 aa3.88□□□□□ -1.79
CDC9YDL164C RPN6Q12377 434 aa3.88□□□□□ -1.79
CDC9YDL164C PNS1Q12412 539 aa3.88□□□□□ -1.79
CDC9YDL164C TUS1Q06412 1307 aa3.88□□□□□ -1.79
CDC9YDL164C TY1B-DR4Q07793 1604 aa3.87□□□□□ -1.79
CDC9YDL164C RPL27AP0C2H6 136 aaKnown RBP3.87□□□□□ -1.79
CDC9YDL164C RPL27BP0C2H7 136 aaKnown RBP3.87□□□□□ -1.79
CDC9YDL164C SNF6P18888 332 aa3.87□□□□□ -1.79
CDC9YDL164C DCC1P25559 380 aa3.87□□□□□ -1.79
CDC9YDL164C RAD5P32849 1169 aaPredicted RBP3.87□□□□□ -1.79
CDC9YDL164C SUL1P38359 859 aa3.87□□□□□ -1.79
CDC9YDL164C ARN1P38731 627 aa3.87□□□□□ -1.79
CDC9YDL164C MET30P39014 640 aa3.87□□□□□ -1.79
CDC9YDL164C MMF1P40185 145 aaKnown RBP3.87□□□□□ -1.79
CDC9YDL164C MRPL49P40858 161 aaPredicted RBP3.87□□□□□ -1.79
CDC9YDL164C GAB1P41733 394 aa3.87□□□□□ -1.79
CDC9YDL164C IRC7P43623 340 aa3.87□□□□□ -1.79
CDC9YDL164C MGA1P53050 456 aa3.87□□□□□ -1.79
CDC9YDL164C ALG13P53178 202 aa3.87□□□□□ -1.79
CDC9YDL164C CSM4Q08955 156 aa3.87□□□□□ -1.79
CDC9YDL164C SLM3Q12093 417 aa3.87□□□□□ -1.79
CDC9YDL164C YDL009CQ12210 107 aa3.87□□□□□ -1.79
CDC9YDL164C YOP1Q12402 180 aa3.87□□□□□ -1.79
CDC9YDL164C YPL229WQ99395 206 aa3.87□□□□□ -1.79
CDC9YDL164C TPK3P05986 398 aa3.87□□□□□ -1.79
CDC9YDL164C ASP3-2P0CX77 362 aa3.87□□□□□ -1.79
CDC9YDL164C ASP3-3P0CX78 362 aa3.87□□□□□ -1.79
CDC9YDL164C ASP3-4P0CX79 362 aa3.87□□□□□ -1.79
CDC9YDL164C ASP3-1P0CZ17 362 aa3.87□□□□□ -1.79
CDC9YDL164C GIT1P25346 518 aa3.87□□□□□ -1.79
CDC9YDL164C YCR022CP25620 114 aa3.87□□□□□ -1.79
CDC9YDL164C PRX1P34227 261 aaKnown RBP3.87□□□□□ -1.79
CDC9YDL164C MCR1P36060 302 aaKnown RBP3.87□□□□□ -1.79
CDC9YDL164C AIM3P38266 947 aaKnown RBP3.87□□□□□ -1.79
CDC9YDL164C OSH3P38713 996 aaKnown RBP3.87□□□□□ -1.79
CDC9YDL164C PCL5P38794 229 aa3.87□□□□□ -1.79
CDC9YDL164C POG1P40473 351 aa3.87□□□□□ -1.79
CDC9YDL164C SNZ3P43545 298 aa3.87□□□□□ -1.79
CDC9YDL164C TMA22P47089 198 aaPredicted RBP3.87□□□□□ -1.79
CDC9YDL164C SNZ2P53824 298 aa3.87□□□□□ -1.79
CDC9YDL164C MRPL51Q06090 140 aaPredicted RBP3.87□□□□□ -1.79
CDC9YDL164C EDE1P34216 1381 aa3.87□□□□□ -1.79
CDC9YDL164C POL1P13382 1468 aa3.87□□□□□ -1.79
CDC9YDL164C SIN3P22579 1536 aa3.87□□□□□ -1.79
CDC9YDL164C EXO70P19658 623 aa3.86□□□□□ -1.79
CDC9YDL164C LSB5P25369 354 aa3.86□□□□□ -1.79
CDC9YDL164C SSO1P32867 290 aa3.86□□□□□ -1.79
CDC9YDL164C FES1P38260 290 aa3.86□□□□□ -1.79
CDC9YDL164C YBR137WP38276 179 aa3.86□□□□□ -1.79
CDC9YDL164C IKI1P38874 309 aa3.86□□□□□ -1.79
CDC9YDL164C DDI1P40087 428 aa3.86□□□□□ -1.79
CDC9YDL164C WWM1P43582 211 aaKnown RBP3.86□□□□□ -1.79
CDC9YDL164C RRT5P43607 289 aa3.86□□□□□ -1.79
CDC9YDL164C GPI1P53306 609 aa3.86□□□□□ -1.79
CDC9YDL164C GFD1Q04839 188 aaKnown RBP3.86□□□□□ -1.79
CDC9YDL164C BPT1P14772 1559 aa3.86□□□□□ -1.79
CDC9YDL164C SSK2P53599 1579 aa3.86□□□□□ -1.79
CDC9YDL164C REV3P14284 1504 aa3.86□□□□□ -1.79
CDC9YDL164C SPT6P23615 1451 aaKnown RBP3.86□□□□□ -1.79
CDC9YDL164C PHO80P20052 293 aa3.86□□□□□ -1.79
CDC9YDL164C YCR007CP25354 239 aa3.86□□□□□ -1.79
CDC9YDL164C HOM6P31116 359 aaKnown RBP3.86□□□□□ -1.79
CDC9YDL164C NUP2P32499 720 aa3.86□□□□□ -1.79
CDC9YDL164C THI80P35202 319 aa3.86□□□□□ -1.79
CDC9YDL164C SWD2P36104 329 aaPredicted RBP3.86□□□□□ -1.79
CDC9YDL164C YCR041WP37265 110 aa3.86□□□□□ -1.79
CDC9YDL164C LYS1P38998 373 aaRIP-Chip data3.86□□□□□ -1.79not detected
CDC9YDL164C BDH2P39713 417 aa3.86□□□□□ -1.79
CDC9YDL164C MAL13P53338 473 aa3.86□□□□□ -1.79
CDC9YDL164C YNR048WP53740 393 aa3.86□□□□□ -1.79
CDC9YDL164C BSC1Q12140 328 aa3.86□□□□□ -1.79
CDC9YDL164C IRC20Q06554 1556 aa3.85□□□□□ -1.79
CDC9YDL164C PAN1P32521 1480 aa3.85□□□□□ -1.79
CDC9YDL164C MMS1Q06211 1407 aa3.85□□□□□ -1.79
CDC9YDL164C HIS4P00815 799 aaKnown RBP3.85□□□□□ -1.79
CDC9YDL164C TPI1P00942 248 aaKnown RBP3.85□□□□□ -1.79
CDC9YDL164C EXG1P23776 448 aaKnown RBP3.85□□□□□ -1.79
CDC9YDL164C QRI5P32344 111 aa3.85□□□□□ -1.79
CDC9YDL164C SPC34P36131 295 aa3.85□□□□□ -1.79
CDC9YDL164C RIB5P38145 238 aa3.85□□□□□ -1.79
CDC9YDL164C BMT5P40493 336 aa3.85□□□□□ -1.79
CDC9YDL164C KEG1P43614 200 aa3.85□□□□□ -1.79
CDC9YDL164C MST27P53176 234 aa3.85□□□□□ -1.79
CDC9YDL164C GND2P53319 492 aa3.85□□□□□ -1.79
CDC9YDL164C MSO1P53604 210 aaKnown RBP3.85□□□□□ -1.79
CDC9YDL164C MRPL50P53724 139 aa3.85□□□□□ -1.79
CDC9YDL164C VAC7P53950 1165 aa3.85□□□□□ -1.79
CDC9YDL164C IRC4Q03036 179 aa3.85□□□□□ -1.79
CDC9YDL164C EBS1Q03466 884 aaKnown RBP3.85□□□□□ -1.79
CDC9YDL164C PLB3Q08108 686 aa3.85□□□□□ -1.79
CDC9YDL164C YOL073CQ08232 322 aa3.85□□□□□ -1.79
CDC9YDL164C NCA2Q12374 616 aa3.85□□□□□ -1.79
CDC9YDL164C SMC4Q12267 1418 aa3.85□□□□□ -1.79
CDC9YDL164C MTF1P14908 341 aaKnown RBP3.84□□□□□ -1.79
CDC9YDL164C CHA1P25379 360 aaKnown RBP3.84□□□□□ -1.79
CDC9YDL164C AST1P35183 429 aa3.84□□□□□ -1.79
CDC9YDL164C SUR2P38992 349 aa3.84□□□□□ -1.79
CDC9YDL164C ARG2P40360 574 aa3.84□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms