RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 PTPAQ15257 358 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 ARHGAP44Q17R89 818 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 TTC38Q5R3I4 469 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 LY6G5CQ5SRR4 150 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 KCNV1Q6PIU1 500 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 OTOP1Q7RTM1 612 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 FGD2Q7Z6J4 655 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 CLEC14AQ86T13 490 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 DDX53Q86TM3 631 aaKnown RBP4.56□□□□□ -1.68
SCN1A-208ENST00000625916 VRK3Q8IV63 474 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 GPR150Q8NGU9 434 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 PROKR1Q8TCW9 393 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 RPGRQ92834 1020 aaKnown RBP4.56□□□□□ -1.68
SCN1A-208ENST00000625916 VOPP1Q96AW1 172 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 LENG9Q96B70 501 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 ZNF512Q96ME7 567 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-208ENST00000625916 DEPDC7Q96QD5 511 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 TUBGCP5Q96RT8 1024 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 TANGO6Q9C0B7 1094 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 PCIF1Q9H4Z3 704 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 TRPS1Q9UHF7 1281 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 ABHD16AO95870 558 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 GNAT2P19087 354 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 LMO1P25800 156 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 NPEPPSP55786 919 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 BMP8AQ7Z5Y6 402 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 ZSWIM2Q8NEG5 633 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 MDGA1Q8NFP4 955 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 CPT1CQ8TCG5 803 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 FAM193BQ96PV7 902 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-208ENST00000625916 MLST8Q9BVC4 326 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 MRPL4Q9BYD3 311 aaKnown RBP4.55□□□□□ -1.68
SCN1A-208ENST00000625916 C14orf93Q9H972 538 aaKnown RBP4.55□□□□□ -1.68
SCN1A-208ENST00000625916 ACSS2Q9NR19 701 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 ZNHIT2Q9UHR6 403 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 SYNPO2Q9UMS6 1093 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 FZD1Q9UP38 647 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 SORCS3Q9UPU3 1222 aa4.55□□□□□ -1.68
SCN1A-208ENST00000625916 CCDC163A0A0D9SF12 145 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 FAM221BA6H8Z2 402 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 M0R2C6 588 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 PPFIA4O75335 1185 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 LMNAP02545 664 aaKnown RBP4.54□□□□□ -1.68
SCN1A-208ENST00000625916 ITGB1P05556 798 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 HNRNPLP14866 589 aaKnown RBP eCLIP4.54□□□□□ -1.68
SCN1A-208ENST00000625916 PROZP22891 400 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 GTF2F1P35269 517 aaKnown RBP eCLIP4.54□□□□□ -1.68
SCN1A-208ENST00000625916 ADRA1BP35368 520 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 RBM25P49756 843 aaKnown RBP4.54□□□□□ -1.68
SCN1A-208ENST00000625916 BCAR1P56945 870 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 SPIDRQ14159 915 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 RASA3Q14644 834 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 NAALADL2Q58DX5 795 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 C1QL3Q5VWW1 255 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 HTR3DQ70Z44 454 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 LRP10Q7Z4F1 713 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 CMTM4Q8IZR5 234 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 ST8SIA2Q92186 375 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 RIOX1Q9H6W3 641 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 PACSIN3Q9UKS6 424 aa4.54□□□□□ -1.68
SCN1A-208ENST00000625916 CCDC9Q9Y3X0 531 aaKnown RBP4.54□□□□□ -1.68
SCN1A-208ENST00000625916 H7C1D1 291 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 DVL2O14641 736 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 MAFGO15525 162 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 CYP17A1P05093 508 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 HK1P19367 917 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 KIR2DL3P43628 341 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 ZNF174Q15697 407 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 CCDC142Q17RM4 750 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 TIGD2Q4W5G0 525 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 LRRC55Q6ZSA7 311 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 RHOUQ7L0Q8 258 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 NME9Q86XW9 330 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 CHST14Q8NCH0 376 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 THAP3Q8WTV1 239 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-208ENST00000625916 UIMC1Q96RL1 719 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 DNAJC7Q99615 494 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 HIRIP3Q9BW71 556 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-208ENST00000625916 EPC1Q9H2F5 836 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 TRIM39Q9HCM9 518 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 SNTG2Q9NY99 539 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 SAMD15Q9P1V8 674 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 PTGFRNQ9P2B2 879 aa4.53□□□□□ -1.68
SCN1A-208ENST00000625916 PTPDC1A2A3K4 754 aa4.52□□□□□ -1.69
SCN1A-208ENST00000625916 B4E1Z4 1266 aa4.52□□□□□ -1.69
SCN1A-208ENST00000625916 KCNQ2O43526 872 aa4.52□□□□□ -1.69
SCN1A-208ENST00000625916 RECQL4O94761 1208 aa4.52□□□□□ -1.69
SCN1A-208ENST00000625916 SCAF4O95104 1147 aaKnown RBP4.52□□□□□ -1.69
SCN1A-208ENST00000625916 NR4A1P22736 598 aa4.52□□□□□ -1.69
SCN1A-208ENST00000625916 IL12RB1P42701 662 aa4.52□□□□□ -1.69
SCN1A-208ENST00000625916 RANGAP1P46060 587 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-208ENST00000625916 MECP2P51608 486 aaKnown RBP4.52□□□□□ -1.69
SCN1A-208ENST00000625916 MRPS21P82921 87 aaKnown RBP4.52□□□□□ -1.69
SCN1A-208ENST00000625916 DCAF17Q5H9S7 520 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-208ENST00000625916 KIAA1958Q8N8K9 716 aa4.52□□□□□ -1.69
SCN1A-208ENST00000625916 SRPK1Q96SB4 655 aaKnown RBP4.52□□□□□ -1.69
SCN1A-208ENST00000625916 CABP5Q9NP86 173 aa4.52□□□□□ -1.69
SCN1A-208ENST00000625916 GRXCR1A8MXD5 290 aa4.51□□□□□ -1.69
SCN1A-208ENST00000625916 B3GALT2O43825 422 aa4.51□□□□□ -1.69
SCN1A-208ENST00000625916 GLRX3O76003 335 aaKnown RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms