RNA–Protein interactions for RNA: ENST00000607559.1

TPM2-208, Transcript of tropomyosin 2, human

TSL 2

Gene TPM2, Length 518 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM2-208	ENST00000607559	SLITRK3	O94933	977 aa		12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	BAG4	O95429	457 aa	Known RBP	12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	XRCC6	P12956	609 aa	Known RBP eCLIP	12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	COL9A1	P20849	921 aa		12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	PLCB2	Q00722	1185 aa		12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	POU5F1B	Q06416	359 aa		12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	LEXM	Q3ZCV2	418 aa		12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	DIS3L2	Q8IYB7	885 aa	Known RBP	12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	LRRC71	Q8N4P6	559 aa		12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	BANK1	Q8NDB2	785 aa		12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	SPPL3	Q8TCT6	385 aa		12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	PABPC5	Q96DU9	382 aa	Known RBP	12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	NECAB3	Q96P71	396 aa	Predicted RBP	12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	INO80B	Q9C086	356 aa	Predicted RBP	12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	CYP26B1	Q9NR63	512 aa		12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	SH2B1	Q9NRF2	756 aa	Predicted RBP	12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	WRAP73	Q9P2S5	460 aa	Predicted RBP	12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	PCDHA12	Q9UN75	941 aa		12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	AKT3	Q9Y243	479 aa		12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	MRPL42	Q9Y6G3	142 aa	Known RBP	12.02	□□□□□ -0.49
TPM2-208	ENST00000607559	DENND3	A2RUS2	1198 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	FAM205C	A6NFA0	338 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	DDX11L8	A8MPP1	907 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	GRM6	O15303	877 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	GAS2	O43903	313 aa	Known RBP	12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	ZNF623	O75123	536 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	RFC5	P40937	340 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	HMGN5	P82970	282 aa	Known RBP	12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	UBE3A	Q05086	875 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	DRP2	Q13474	957 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	OTUD6A	Q7L8S5	288 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	ZNF598	Q86UK7	904 aa	Known RBP	12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	FBXO18	Q8NFZ0	1043 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	FOXP1	Q9H334	677 aa	Predicted RBP	12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	NSUN3	Q9H649	340 aa	Known RBP	12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	ZSWIM4	Q9H7M6	989 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	UBE2Z	Q9H832	354 aa	Predicted RBP	12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	IFT122	Q9HBG6	1241 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	RNF19A	Q9NV58	838 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	GINS2	Q9Y248	185 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	PCDHGA4	Q9Y5G9	962 aa		12.01	□□□□□ -0.49
TPM2-208	ENST00000607559	COL4A4	P53420	1690 aa	Predicted RBP	12	□□□□□ -0.49
TPM2-208	ENST00000607559	MYH9	P35579	1960 aa	Known RBP	12	□□□□□ -0.49
TPM2-208	ENST00000607559	ASAP2	O43150	1006 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	HOXA2	O43364	376 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	DTNB	O60941	627 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	ITGB1	P05556	798 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	ZSCAN20	P17040	1043 aa	Predicted RBP	12	□□□□□ -0.49
TPM2-208	ENST00000607559	CTNNB1	P35222	781 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	PCBP1	Q15365	356 aa	Known RBP eCLIP	12	□□□□□ -0.49
TPM2-208	ENST00000607559	CSPP1	Q1MSJ5	1256 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	PUS10	Q3MIT2	529 aa	Known RBP	12	□□□□□ -0.49
TPM2-208	ENST00000607559	MTERF2	Q49AM1	385 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	FAM102B	Q5T8I3	360 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	TRMT1L	Q7Z2T5	733 aa	Known RBP	12	□□□□□ -0.49
TPM2-208	ENST00000607559	ECHDC2	Q86YB7	292 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	CASD1	Q96PB1	797 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	GCOM2	Q9BZD3	368 aa	Predicted RBP	12	□□□□□ -0.49
TPM2-208	ENST00000607559	TMEM117	Q9H0C3	514 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	CWH43	Q9H720	699 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	ATP6V0A4	Q9HBG4	840 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	ANKEF1	Q9NU02	776 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	DACT1	Q9NYF0	836 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	RGL1	Q9NZL6	768 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	SUCLA2	Q9P2R7	463 aa	Predicted RBP	12	□□□□□ -0.49
TPM2-208	ENST00000607559	SEPT9	Q9UHD8	586 aa	Predicted RBP	12	□□□□□ -0.49
TPM2-208	ENST00000607559	LRFN2	Q9ULH4	789 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	LZTS1	Q9Y250	596 aa		12	□□□□□ -0.49
TPM2-208	ENST00000607559	TMEM150B	A6NC51	233 aa		11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	WNT7A	O00755	349 aa		11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	U2AF2	P26368	475 aa	Known RBP eCLIP	11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	YWHAB	P31946	246 aa	Known RBP	11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	LTBR	P36941	435 aa		11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	NPEPPS	P55786	919 aa		11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	TRIM29	Q14134	588 aa		11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	TCEAL5	Q5H9L2	206 aa		11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	KLHL23	Q8NBE8	558 aa		11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	SLC7A3	Q8WY07	619 aa		11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	LXN	Q9BS40	222 aa		11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	TTC12	Q9H892	705 aa	Predicted RBP	11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	AAAS	Q9NRG9	546 aa		11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	RALGAPA2	Q2PPJ7	1873 aa		11.99	□□□□□ -0.49
TPM2-208	ENST00000607559	MUC6	Q6W4X9	2439 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	EVPL	Q92817	2033 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	WDR81	Q562E7	1941 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559		A0A087WZ62	844 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	CARNS1	A5YM72	827 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	GRXCR2	A6NFK2	248 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	NEMF	O60524	1076 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	SKI	P12755	728 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	ATF7	P17544	494 aa	Predicted RBP	11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	MUT	P22033	750 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	KCNA5	P22460	613 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	SFPQ	P23246	707 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	DNAJB1	P25685	340 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	TRAPPC10	P48553	1259 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	PLCB3	Q01970	1234 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	HYAL1	Q12794	435 aa		11.98	□□□□□ -0.49
TPM2-208	ENST00000607559	ADAM15	Q13444	863 aa		11.98	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms