RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 ABHD14A-ACY1A0A1B0GW23 586 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 CSDE1O75534 798 aaKnown RBP17.57■□□□□ 0.4
CHD3-215ENST00000572750 PBX2P40425 430 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 UBA7P41226 1012 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 KARSQ15046 597 aaKnown RBP17.57■□□□□ 0.4
CHD3-215ENST00000572750 TMEM119Q4V9L6 283 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.57■□□□□ 0.4
CHD3-215ENST00000572750 USP49Q70CQ1 688 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 KRI1Q8N9T8 703 aaKnown RBP17.57■□□□□ 0.4
CHD3-215ENST00000572750 RASSF8Q8NHQ8 419 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 ASAP3Q8TDY4 903 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 LRRC15Q8TF66 581 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 TCP11Q8WWU5 503 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 LINC01599Q8WXQ3 324 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 EPSTI1Q96J88 318 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 SLC9A7Q96T83 725 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 FDXACB1Q9BRP7 624 aaPredicted RBP17.57■□□□□ 0.4
CHD3-215ENST00000572750 C1QTNF1Q9BXJ1 281 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 POLR3FQ9H1D9 316 aaPredicted RBP17.57■□□□□ 0.4
CHD3-215ENST00000572750 ERVK-5Q9HDB9 667 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 SQORQ9Y6N5 450 aa17.57■□□□□ 0.4
CHD3-215ENST00000572750 MORC2Q9Y6X9 1032 aaPredicted RBP17.57■□□□□ 0.4
CHD3-215ENST00000572750 SPTLC2O15270 562 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 YEATS4O95619 227 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 EYA4O95677 639 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 BMP1P13497 986 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 DARSP14868 501 aaKnown RBP17.56■□□□□ 0.4
CHD3-215ENST00000572750 FGFR4P22455 802 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 ANP32AP39687 249 aaKnown RBP17.56■□□□□ 0.4
CHD3-215ENST00000572750 RABGGTBP53611 331 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 LAMTOR4Q0VGL1 99 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 NFX1Q12986 1120 aaKnown RBP17.56■□□□□ 0.4
CHD3-215ENST00000572750 ZNF410Q86VK4 478 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 TIFAQ96CG3 184 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 NT5C3AQ9H0P0 336 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 TMX1Q9H3N1 280 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 ST3GAL5Q9UNP4 418 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 DNM3Q9UQ16 869 aa17.56■□□□□ 0.4
CHD3-215ENST00000572750 TCHHQ07283 1943 aa17.55■□□□□ 0.4
CHD3-215ENST00000572750 MYO9BQ13459 2157 aa17.55■□□□□ 0.4
CHD3-215ENST00000572750 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.55■□□□□ 0.4
CHD3-215ENST00000572750 EFCAB14O75071 495 aa17.55■□□□□ 0.4
CHD3-215ENST00000572750 SSBP05455 408 aaKnown RBP eCLIP17.55■□□□□ 0.4
CHD3-215ENST00000572750 SRGAP2CP0DJJ0 459 aa17.55■□□□□ 0.4
CHD3-215ENST00000572750 PLCG1P19174 1290 aa17.55■□□□□ 0.4
CHD3-215ENST00000572750 EIF4BP23588 611 aaKnown RBP17.55■□□□□ 0.4
CHD3-215ENST00000572750 DDIT3P35638 169 aa17.55■□□□□ 0.4
CHD3-215ENST00000572750 FAM102BQ5T8I3 360 aa17.55■□□□□ 0.4
CHD3-215ENST00000572750 MYOCDQ8IZQ8 938 aa17.55■□□□□ 0.4
CHD3-215ENST00000572750 MCPH1Q8NEM0 835 aa17.55■□□□□ 0.4
CHD3-215ENST00000572750 CALML4Q96GE6 196 aa17.55■□□□□ 0.4
CHD3-215ENST00000572750 RUSC1Q9BVN2 902 aa17.55■□□□□ 0.4
CHD3-215ENST00000572750 PBX4Q9BYU1 374 aa17.55■□□□□ 0.4
CHD3-215ENST00000572750 GCOM2Q9BZD3 368 aaPredicted RBP17.55■□□□□ 0.4
CHD3-215ENST00000572750 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.54■□□□□ 0.4
CHD3-215ENST00000572750 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.54■□□□□ 0.4
CHD3-215ENST00000572750 MGEA5O60502 916 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 PPP6R2O75170 966 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 AMHP03971 560 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 CYP11B2P19099 503 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 NCLP19338 710 aaKnown RBP17.54■□□□□ 0.4
CHD3-215ENST00000572750 GLRA2P23416 452 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 ARL2P36404 184 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 CAPSQ13938 189 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 FAM117BQ6P1L5 589 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 ALYREFQ86V81 257 aaKnown RBP17.54■□□□□ 0.4
CHD3-215ENST00000572750 HERC6Q8IVU3 1022 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 ZNF710Q8N1W2 664 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 RNF149Q8NC42 400 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 IFT122Q9HBG6 1241 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 POLD4Q9HCU8 107 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 C11orf16Q9NQ32 467 aa17.54■□□□□ 0.4
CHD3-215ENST00000572750 MYH11P35749 1972 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 COL4A6Q14031 1691 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 GPR182O15218 404 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 SLC26A4O43511 780 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 MYOGP15173 224 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 IBSPP21815 317 aaPredicted RBP17.53■□□□□ 0.4
CHD3-215ENST00000572750 CDC42EP1Q00587 391 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 TFF2Q03403 129 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 MXD4Q14582 209 aaPredicted RBP17.53■□□□□ 0.4
CHD3-215ENST00000572750 KCNG4Q8TDN1 519 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 BSNDQ8WZ55 320 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 SNX27Q96L92 541 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 FTHL17Q9BXU8 183 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 CCSER1Q9C0I3 900 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 MINDY3Q9H8M7 445 aa17.53■□□□□ 0.4
CHD3-215ENST00000572750 YBX2Q9Y2T7 364 aaKnown RBP17.53■□□□□ 0.4
CHD3-215ENST00000572750 UPP2O95045 317 aa17.52■□□□□ 0.4
CHD3-215ENST00000572750 PLA2G4BP0C869 781 aa17.52■□□□□ 0.4
CHD3-215ENST00000572750 SFPQP23246 707 aaKnown RBP eCLIP17.52■□□□□ 0.4
CHD3-215ENST00000572750 TXLNAP40222 546 aa17.52■□□□□ 0.4
CHD3-215ENST00000572750 PHKA2P46019 1235 aa17.52■□□□□ 0.4
CHD3-215ENST00000572750 SLC12A3P55017 1021 aa17.52■□□□□ 0.4
CHD3-215ENST00000572750 RAD51AP2Q09MP3 1159 aa17.52■□□□□ 0.4
CHD3-215ENST00000572750 ATL3Q6DD88 541 aa17.52■□□□□ 0.4
CHD3-215ENST00000572750 PHOSPHO2Q8TCD6 241 aa17.52■□□□□ 0.4
CHD3-215ENST00000572750 KHSRPQ92945 711 aaKnown RBP eCLIP17.52■□□□□ 0.4
CHD3-215ENST00000572750 TSPYL2Q9H2G4 693 aaPredicted RBP17.52■□□□□ 0.4
CHD3-215ENST00000572750 BLOC1S4Q9NUP1 217 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms