RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 LPIN3Q9BQK8 851 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 XPO4Q9C0E2 1151 aaKnown RBP5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 SMG9Q9H0W8 520 aaKnown RBP5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 ELAC1Q9H777 363 aaKnown RBP5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 OXSMQ9NWU1 459 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 FEZ2Q9UHY8 353 aaPredicted RBP5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 ODF2LQ9ULJ1 636 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 GPR34Q9UPC5 381 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 PRAG1Q86YV5 1406 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 A0A0A0MRY4 1105 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 H3BML4 177 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 FRS3O43559 492 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 PROCP04070 461 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 ALDH2P05091 517 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 CKMP06732 381 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 SRGAP2CP0DJJ0 459 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 AKR1B1P15121 316 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 YBX3P16989 372 aaKnown RBP eCLIP5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 LIFRP42702 1097 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 GATA4P43694 442 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 MECP2P51608 486 aaKnown RBP5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 BPIFB3P59826 476 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 ALDH6A1Q02252 535 aaKnown RBP5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 GALNT1Q10472 559 aaPredicted RBP5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 MAP4K2Q12851 820 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 PDCD1Q15116 288 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 CNN3Q15417 329 aaKnown RBP5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 TMEM177Q53S58 311 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 RILPL1Q5EBL4 403 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 SCARA3Q6AZY7 606 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 GTF2IRD2BQ6EKJ0 949 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 STYK1Q6J9G0 422 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 NEK10Q6ZWH5 1172 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 MTDHQ86UE4 582 aaKnown RBP5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 GTF2IRD2Q86UP8 949 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 DMRTC2Q8IXT2 367 aaPredicted RBP5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 TEX11Q8IYF3 940 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 ZNF527Q8NB42 609 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 FERMT2Q96AC1 680 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 NT5C1BQ96P26 610 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 SDF4Q9BRK5 362 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 SORBS1Q9BX66 1292 aaKnown RBP5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 TMEM120AQ9BXJ8 343 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 ITGB1BP2Q9UKP3 347 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 MAGED2Q9UNF1 606 aaPredicted RBP5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 TMEM98Q9Y2Y6 226 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 NEXMIFQ5QGS0 1516 aa5.95□□□□□ -1.46
VPS35P1-201ENST00000563400 TRIM64A6NGJ6 449 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 TRIM64BA6NI03 449 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 FAM229AH3BQW9 127 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 DDX3XO00571 662 aaKnown RBP eCLIP5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 AQP7O14520 342 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 P4HA2O15460 535 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 PDCP20941 246 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 HMGB2P26583 209 aaKnown RBP5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 GRK4P32298 578 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 CTNNA1P35221 906 aaKnown RBP5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 ECI1P42126 302 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 TECP42680 631 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 CHRNA4P43681 627 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 KRT83P78385 493 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 MEA1Q16626 185 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 SLC35F1Q5T1Q4 408 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 MFSD4BQ5TF39 518 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 TXNDC11Q6PKC3 985 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 HDXQ7Z353 690 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 LIX1LQ8IVB5 337 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 ZC3H7AQ8IWR0 971 aaKnown RBP5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 CCDC144CPQ8IYA2 1237 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 PHACTR4Q8IZ21 702 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 CACNA2D3Q8IZS8 1091 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 CHST14Q8NCH0 376 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 UCMAQ8WVF2 138 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 PHKBQ93100 1093 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 C1GALT1C1Q96EU7 318 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 STK31Q9BXU1 1019 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 AASSQ9UDR5 926 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 ZNF112Q9UJU3 913 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 ALKQ9UM73 1620 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 NRXN1Q9ULB1 1477 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 TECPR2O15040 1411 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 ADAMTS13Q76LX8 1427 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 PRAMEF27A3QJZ7 478 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 DCDC2CA8MYV0 355 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 ADAMTS3O15072 1205 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 HMMRO75330 724 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 PPM1BO75688 479 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 SMNDC1O75940 238 aaKnown RBP eCLIP5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 PAPLNO95428 1278 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 ECEL1O95672 775 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 ITGB2P05107 769 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 SNRPB2P08579 225 aaKnown RBP5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 PSMA3P25788 255 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 CAP2P40123 477 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 STAT1P42224 750 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 BAG6P46379 1132 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 NPTX2P47972 431 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 MMP14P50281 582 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 ZNF131P52739 623 aa5.94□□□□□ -1.46
VPS35P1-201ENST00000563400 COPAP53621 1224 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms