RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 SNX21Q969T3 373 aa17.5■□□□□ 0.39
CCDC78-216ENST00000544996 ELAC1Q9H777 363 aaKnown RBP17.5■□□□□ 0.39
CCDC78-216ENST00000544996 IFT122Q9HBG6 1241 aa17.5■□□□□ 0.39
CCDC78-216ENST00000544996 TMEM161AQ9NX61 479 aa17.5■□□□□ 0.39
CCDC78-216ENST00000544996 MTCH2Q9Y6C9 303 aa17.5■□□□□ 0.39
CCDC78-216ENST00000544996 COL4A6Q14031 1691 aa17.49■□□□□ 0.39
CCDC78-216ENST00000544996 LPXNO60711 386 aa17.49■□□□□ 0.39
CCDC78-216ENST00000544996 PHKA2P46019 1235 aa17.49■□□□□ 0.39
CCDC78-216ENST00000544996 ATP2C1P98194 919 aaPredicted RBP17.49■□□□□ 0.39
CCDC78-216ENST00000544996 RNF149Q8NC42 400 aa17.49■□□□□ 0.39
CCDC78-216ENST00000544996 MCPH1Q8NEM0 835 aa17.49■□□□□ 0.39
CCDC78-216ENST00000544996 SNX29Q8TEQ0 813 aa17.49■□□□□ 0.39
CCDC78-216ENST00000544996 GDPD5Q8WTR4 605 aa17.49■□□□□ 0.39
CCDC78-216ENST00000544996 XPNPEP1Q9NQW7 623 aa17.49■□□□□ 0.39
CCDC78-216ENST00000544996 LMCD1Q9NZU5 365 aa17.49■□□□□ 0.39
CCDC78-216ENST00000544996 ARHGEF35A5YM69 484 aa17.48■□□□□ 0.39
CCDC78-216ENST00000544996 HOXA2O43364 376 aa17.48■□□□□ 0.39
CCDC78-216ENST00000544996 USO1O60763 962 aaKnown RBP17.48■□□□□ 0.39
CCDC78-216ENST00000544996 BMP15O95972 392 aa17.48■□□□□ 0.39
CCDC78-216ENST00000544996 RB1P06400 928 aa17.48■□□□□ 0.39
CCDC78-216ENST00000544996 CTNNB1P35222 781 aa17.48■□□□□ 0.39
CCDC78-216ENST00000544996 BMPR1AP36894 532 aa17.48■□□□□ 0.39
CCDC78-216ENST00000544996 PTPROQ16827 1216 aa17.48■□□□□ 0.39
CCDC78-216ENST00000544996 PAN2Q504Q3 1202 aaKnown RBP17.48■□□□□ 0.39
CCDC78-216ENST00000544996 TWF2Q6IBS0 349 aaKnown RBP17.48■□□□□ 0.39
CCDC78-216ENST00000544996 HSCBQ8IWL3 235 aa17.48■□□□□ 0.39
CCDC78-216ENST00000544996 CLP1Q92989 425 aaKnown RBP17.48■□□□□ 0.39
CCDC78-216ENST00000544996 KIAA1024Q9UPX6 916 aa17.48■□□□□ 0.39
CCDC78-216ENST00000544996 PIN4Q9Y237 131 aaKnown RBP17.48■□□□□ 0.39
CCDC78-216ENST00000544996 A0A0U1RQF3 1178 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 TBKBP1A7MCY6 615 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 H3BNC9 293 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 EOMESO95936 686 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 SKIP12755 728 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 SYT1P21579 422 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 ARL2P36404 184 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 POU5F1BQ06416 359 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 NCBP1Q09161 790 aaKnown RBP17.47■□□□□ 0.39
CCDC78-216ENST00000544996 GPM6BQ13491 265 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 PCBP1Q15365 356 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC78-216ENST00000544996 IL17AQ16552 155 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 FAM102BQ5T8I3 360 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 ARL6IP4Q66PJ3 421 aaKnown RBP17.47■□□□□ 0.39
CCDC78-216ENST00000544996 PADI6Q6TGC4 694 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 ECHDC2Q86YB7 292 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC78-216ENST00000544996 ABI1Q8IZP0 508 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 RNF169Q8NCN4 708 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 C11orf84Q9BUA3 381 aaPredicted RBP17.47■□□□□ 0.39
CCDC78-216ENST00000544996 PLVAPQ9BX97 442 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 POLR3FQ9H1D9 316 aaPredicted RBP17.47■□□□□ 0.39
CCDC78-216ENST00000544996 FOXD4L1Q9NU39 408 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 MRPL42Q9Y6G3 142 aaKnown RBP17.47■□□□□ 0.39
CCDC78-216ENST00000544996 TTC3P53804 2025 aa17.47■□□□□ 0.39
CCDC78-216ENST00000544996 COL6A3P12111 3177 aa17.46■□□□□ 0.39
CCDC78-216ENST00000544996 VWA3AA6NCI4 1184 aa17.46■□□□□ 0.39
CCDC78-216ENST00000544996 C5orf67F2Z3F1 127 aa17.46■□□□□ 0.39
CCDC78-216ENST00000544996 ERLIN2O94905 339 aa17.46■□□□□ 0.39
CCDC78-216ENST00000544996 HSP90AA1P07900 732 aaKnown RBP17.46■□□□□ 0.39
CCDC78-216ENST00000544996 GATMP50440 423 aa17.46■□□□□ 0.39
CCDC78-216ENST00000544996 PTENP60484 403 aa17.46■□□□□ 0.39
CCDC78-216ENST00000544996 SKIV2LQ15477 1246 aaKnown RBP17.46■□□□□ 0.39
CCDC78-216ENST00000544996 MAEAQ7L5Y9 396 aa17.46■□□□□ 0.39
CCDC78-216ENST00000544996 TRAIPQ9BWF2 469 aa17.46■□□□□ 0.39
CCDC78-216ENST00000544996 BHMT2Q9H2M3 363 aa17.46■□□□□ 0.39
CCDC78-216ENST00000544996 AAASQ9NRG9 546 aa17.46■□□□□ 0.39
CCDC78-216ENST00000544996 DDX19AQ9NUU7 478 aaKnown RBP17.46■□□□□ 0.39
CCDC78-216ENST00000544996 DNM3Q9UQ16 869 aa17.46■□□□□ 0.39
CCDC78-216ENST00000544996 PP2D1A8MPX8 630 aa17.45■□□□□ 0.38
CCDC78-216ENST00000544996 FGFR1P11362 822 aa17.45■□□□□ 0.38
CCDC78-216ENST00000544996 CYP11B2P19099 503 aa17.45■□□□□ 0.38
CCDC78-216ENST00000544996 GLRA2P23416 452 aa17.45■□□□□ 0.38
CCDC78-216ENST00000544996 RAB27AP51159 221 aa17.45■□□□□ 0.38
CCDC78-216ENST00000544996 SPOUT1Q5T280 376 aaKnown RBP17.45■□□□□ 0.38
CCDC78-216ENST00000544996 ASAP3Q8TDY4 903 aa17.45■□□□□ 0.38
CCDC78-216ENST00000544996 TMEM117Q9H0C3 514 aa17.45■□□□□ 0.38
CCDC78-216ENST00000544996 MINDY3Q9H8M7 445 aa17.45■□□□□ 0.38
CCDC78-216ENST00000544996 AGPAT5Q9NUQ2 364 aa17.45■□□□□ 0.38
CCDC78-216ENST00000544996 INO80B-WBP1J3KQ70 363 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 LINC00271P0C7V0 271 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 CDC25AP30304 524 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 CAPSQ13938 189 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 ZRSR1Q15695 479 aaKnown RBP17.44■□□□□ 0.38
CCDC78-216ENST00000544996 ECM1Q16610 540 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 NAALADL2Q58DX5 795 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 IFNLR1Q8IU57 520 aaPredicted RBP17.44■□□□□ 0.38
CCDC78-216ENST00000544996 MRPL38Q96DV4 380 aaKnown RBP17.44■□□□□ 0.38
CCDC78-216ENST00000544996 CDK5RAP3Q96JB5 506 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 AK8Q96MA6 479 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 NFKBIZQ9BYH8 718 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 GPRC5CQ9NQ84 441 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 FAM105AQ9NUU6 356 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 PCDHB12Q9Y5F1 795 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 LOXHD1Q8IVV2 1947 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 CHD7Q9P2D1 2997 aa17.44■□□□□ 0.38
CCDC78-216ENST00000544996 LRRIQ4A6NIV6 560 aa17.43■□□□□ 0.38
CCDC78-216ENST00000544996 STX6O43752 255 aa17.43■□□□□ 0.38
CCDC78-216ENST00000544996 EYA4O95677 639 aa17.43■□□□□ 0.38
CCDC78-216ENST00000544996 AXLP30530 894 aa17.43■□□□□ 0.38
CCDC78-216ENST00000544996 SF3A1Q15459 793 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms