RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 DHX16O60231 1041 aaKnown RBP7.46□□□□□ -1.22
CD44-237ENST00000534082 GDF9O60383 454 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 CXCL14O95715 111 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 RLBP1P12271 317 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 HOXA13P31271 388 aaPredicted RBP7.46□□□□□ -1.22
CD44-237ENST00000534082 TCF7P36402 384 aaPredicted RBP7.46□□□□□ -1.22
CD44-237ENST00000534082 SEMA3FQ13275 785 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 BMS1Q14692 1282 aaKnown RBP7.46□□□□□ -1.22
CD44-237ENST00000534082 PTPN14Q15678 1187 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 LPAL2Q16609 132 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 TSSK4Q6SA08 328 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 SLC24A5Q71RS6 500 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 SLC39A11Q8N1S5 342 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 NELL1Q92832 810 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 INPP4AQ96PE3 977 aaPredicted RBP7.46□□□□□ -1.22
CD44-237ENST00000534082 CELF4Q9BZC1 486 aaKnown RBP7.46□□□□□ -1.22
CD44-237ENST00000534082 TMEM117Q9H0C3 514 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 ZBP1Q9H171 429 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 TCP11L1Q9NUJ3 509 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 ERAP1Q9NZ08 941 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 EPS15L1Q9UBC2 864 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 ANAPC4Q9UJX5 808 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 RAB23Q9ULC3 237 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 PCDHA1Q9Y5I3 950 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 COL4A3Q01955 1670 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 DSPP15924 2871 aaKnown RBP7.46□□□□□ -1.22
CD44-237ENST00000534082 KDM3AQ9Y4C1 1321 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 DOCK5Q9H7D0 1870 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 ITPR1Q14643 2758 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 BPTFQ12830 3046 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 MIA3Q5JRA6 1907 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 KANSL1LA0AUZ9 987 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 SPATA31C2B4DYI2 1134 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 LRP3O75074 770 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 RPS6KA5O75582 802 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 FGRP09769 529 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 CD46P15529 392 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 STARD6P59095 220 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 MRPS9P82933 396 aaKnown RBP7.45□□□□□ -1.22
CD44-237ENST00000534082 KRT76Q01546 638 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 RING1Q06587 406 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 UBXN2BQ14CS0 331 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 PLA2G2CQ5R387 149 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 IL31Q6EBC2 164 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 LAIR1Q6GTX8 287 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 LRSAM1Q6UWE0 723 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 C15orf39Q6ZRI6 1047 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 PRR23CQ6ZRP0 262 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 ZNF598Q86UK7 904 aaKnown RBP7.45□□□□□ -1.22
CD44-237ENST00000534082 ABI1Q8IZP0 508 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 KDF1Q8NAX2 398 aaPredicted RBP7.45□□□□□ -1.22
CD44-237ENST00000534082 NXPE3Q969Y0 559 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 SHDQ96IW2 340 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 CASD1Q96PB1 797 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 MYADMQ96S97 322 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 PRDM9Q9NQV7 894 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 SLC2A4RGQ9NR83 387 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 SEMA4GQ9NTN9 838 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 ECHDC1Q9NTX5 307 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 RNF19AQ9NV58 838 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 MAP3K20Q9NYL2 800 aaKnown RBP7.45□□□□□ -1.22
CD44-237ENST00000534082 NOC2LQ9Y3T9 749 aaKnown RBP7.45□□□□□ -1.22
CD44-237ENST00000534082 C2orf16Q68DN1 1984 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 CLUHO75153 1309 aa7.45□□□□□ -1.22
CD44-237ENST00000534082 KAT6AQ92794 2004 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 LAMA4Q16363 1823 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 RRN3P2A6NIE6 340 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 HOXA2O43364 376 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 HMMRO75330 724 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 RETP07949 1114 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 CTSAP10619 480 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 MAGEA9P43362 315 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 METAP2P50579 478 aaKnown RBP eCLIP7.44□□□□□ -1.22
CD44-237ENST00000534082 CSRP2Q16527 193 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 TSHZ3Q63HK5 1081 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 RNF19BQ6ZMZ0 732 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 FAM43BQ6ZT52 329 aaPredicted RBP7.44□□□□□ -1.22
CD44-237ENST00000534082 PPFIBP1Q86W92 1011 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 FCHSD1Q86WN1 690 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 VPS52Q8N1B4 723 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 TMEM40Q8WWA1 233 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 STAMQ92783 540 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 THAP11Q96EK4 314 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 TMEM169Q96HH4 297 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 TTC14Q96N46 770 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 AMNQ9BXJ7 453 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 ELAC1Q9H777 363 aaKnown RBP7.44□□□□□ -1.22
CD44-237ENST00000534082 JMJD4Q9H9V9 463 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 VAT1LQ9HCJ6 419 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 WDR6Q9NNW5 1121 aaKnown RBP7.44□□□□□ -1.22
CD44-237ENST00000534082 PRMT8Q9NR22 394 aaPredicted RBP7.44□□□□□ -1.22
CD44-237ENST00000534082 GINS2Q9Y248 185 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 FCF1Q9Y324 198 aaKnown RBP7.44□□□□□ -1.22
CD44-237ENST00000534082 IRAK3Q9Y616 596 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 FRMPD4Q14CM0 1322 aa7.44□□□□□ -1.22
CD44-237ENST00000534082 HELZ2Q9BYK8 2649 aaKnown RBP7.44□□□□□ -1.22
CD44-237ENST00000534082 SRRM3A6NNA2 597 aaPredicted RBP7.43□□□□□ -1.22
CD44-237ENST00000534082 NT5C1B-RDH14C9J2C7 533 aa7.43□□□□□ -1.22
CD44-237ENST00000534082 GCOM1H8Y6P7 765 aaPredicted RBP7.43□□□□□ -1.22
CD44-237ENST00000534082 PPP1R11O60927 126 aaPredicted RBP7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms