RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 SMARCA1P28370 1054 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 CSTF2P33240 577 aaKnown RBP eCLIP6.11□□□□□ -1.43
CD44-236ENST00000533222 CTCFP49711 727 aaPredicted RBP6.11□□□□□ -1.43
CD44-236ENST00000533222 MCM2P49736 904 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 SEPHS1P49903 392 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 ZNF131P52739 623 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 NUCB1Q02818 461 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 DRP2Q13474 957 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 SQSTM1Q13501 440 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 LAPTM5Q13571 262 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 SPCS2Q15005 226 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 RCN1Q15293 331 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 ZSCAN23Q3MJ62 389 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 C2orf27AQ580R0 203 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 NAA16Q6N069 864 aaPredicted RBP6.11□□□□□ -1.43
CD44-236ENST00000533222 TLDC1Q6P9B6 456 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 IQCA1Q86XH1 822 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 GALNT15Q8N3T1 639 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 ZBTB38Q8NAP3 1195 aaPredicted RBP6.11□□□□□ -1.43
CD44-236ENST00000533222 EXOC6Q8TAG9 804 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 SH3TC2Q8TF17 1288 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 RUNDC1Q96C34 613 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 CCDC114Q96M63 670 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 JMJD8Q96S16 334 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 BRINP2Q9C0B6 783 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 SEL1LQ9UBV2 794 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 GGA2Q9UJY4 613 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 PAIP2BQ9ULR5 123 aaKnown RBP6.11□□□□□ -1.43
CD44-236ENST00000533222 TMCO1Q9UM00 188 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.11□□□□□ -1.43
CD44-236ENST00000533222 GPRASP1Q5JY77 1395 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 CCDC7Q96M83 1385 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 WDR46O15213 610 aaKnown RBP6.1□□□□□ -1.43
CD44-236ENST00000533222 MGEA5O60502 916 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 HIP1RO75146 1068 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 FSBPO95073 299 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 PARNO95453 639 aaKnown RBP6.1□□□□□ -1.43
CD44-236ENST00000533222 HPXP02790 462 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 SCG5P05408 212 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 TUBBP07437 444 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 EZRP15311 586 aaKnown RBP6.1□□□□□ -1.43
CD44-236ENST00000533222 PIK3CAP42336 1068 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 IFFO1Q0D2I5 559 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 DUSP4Q13115 394 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 STIM1Q13586 685 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 CUL3Q13618 768 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 CUL4BQ13620 913 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 TUBA3CQ13748 450 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 NTRK3Q16288 839 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 Q4G0T1 1027 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 COBLL1Q53SF7 1204 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 SLC35F1Q5T1Q4 408 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 EEF1DP3Q658K8 133 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 CREB3L3Q68CJ9 461 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 CEP128Q6ZU80 1094 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 SLCO6A1Q86UG4 719 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 SESTD1Q86VW0 696 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 KSR1Q8IVT5 923 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 REXO1L1PQ8IX06 675 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 LSMEM2Q8N112 164 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 NLGN1Q8N2Q7 840 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 DIS3LQ8TF46 1054 aaKnown RBP6.1□□□□□ -1.43
CD44-236ENST00000533222 CENPTQ96BT3 561 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 SMC6Q96SB8 1091 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 SLC39A3Q9BRY0 314 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 RTFDC1Q9BY42 306 aaPredicted RBP6.1□□□□□ -1.43
CD44-236ENST00000533222 TRIM4Q9C037 500 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 TBC1D7Q9P0N9 293 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 TRAF3IP3Q9Y228 551 aa6.1□□□□□ -1.43
CD44-236ENST00000533222 RTL1A6NKG5 1358 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 AATKQ6ZMQ8 1374 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 ESYT3A0FGR9 886 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 SGTAO43765 313 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 ZEB2O60315 1214 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 PSPNO60542 156 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 PYGLP06737 847 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 FGFR1P11362 822 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 LCP1P13796 627 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 CD53P19397 219 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 HOXC12P31275 282 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 GDNFP39905 211 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 BIRC3Q13489 604 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 BYSLQ13895 437 aaKnown RBP6.09□□□□□ -1.43
CD44-236ENST00000533222 DDB1Q16531 1140 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 HSF5Q4G112 596 aaPredicted RBP6.09□□□□□ -1.43
CD44-236ENST00000533222 CEP85LQ5SZL2 805 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 ATF7IPQ6VMQ6 1270 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 NSMFQ6X4W1 530 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 TTLL7Q6ZT98 887 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 TTC30AQ86WT1 665 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 PPIL6Q8IXY8 311 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 CHCHD4Q8N4Q1 142 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 CEP112Q8N8E3 955 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 PDZD8Q8NEN9 1154 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 KLHDC4Q8TBB5 520 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 THAP3Q8WTV1 239 aaPredicted RBP6.09□□□□□ -1.43
CD44-236ENST00000533222 CAPS2Q9BXY5 557 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 TAOK3Q9H2K8 898 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 SYNCQ9H7C4 482 aa6.09□□□□□ -1.43
CD44-236ENST00000533222 L2HGDHQ9H9P8 463 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms