RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	6.65	□□□□□ -1.34
CD44-231	ENST00000531110	ADAMTS20	P59510	1910 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110		A0A0G2JNJ9	132 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	IPO7	O95373	1038 aa	Known RBP	6.64	□□□□□ -1.35
CD44-231	ENST00000531110	HSPA5	P11021	654 aa	Known RBP	6.64	□□□□□ -1.35
CD44-231	ENST00000531110	SESN3	P58005	492 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	SLC6A3	Q01959	620 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	FAM50A	Q14320	339 aa	Known RBP	6.64	□□□□□ -1.35
CD44-231	ENST00000531110	ZRSR2	Q15696	482 aa	Known RBP	6.64	□□□□□ -1.35
CD44-231	ENST00000531110	ATP13A4	Q4VNC1	1196 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	PHF19	Q5T6S3	580 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	PDCL2	Q8N4E4	241 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	RPGR	Q92834	1020 aa	Known RBP	6.64	□□□□□ -1.35
CD44-231	ENST00000531110	SLC5A5	Q92911	643 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	CARD11	Q9BXL7	1154 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	TEX13A	Q9BXU3	409 aa	Predicted RBP	6.64	□□□□□ -1.35
CD44-231	ENST00000531110	BRINP2	Q9C0B6	783 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	HAPLN2	Q9GZV7	340 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	KCMF1	Q9P0J7	381 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110		Q9UFV3	132 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	SYNPO2	Q9UMS6	1093 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	VWA7	Q9Y334	891 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	RNF123	Q5XPI4	1314 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	SYNRG	Q9UMZ2	1314 aa		6.64	□□□□□ -1.35
CD44-231	ENST00000531110	ARID1B	Q8NFD5	2236 aa	Predicted RBP	6.64	□□□□□ -1.35
CD44-231	ENST00000531110	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	6.63	□□□□□ -1.35
CD44-231	ENST00000531110	NEMP1	O14524	444 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	EIF3J	O75822	258 aa	Known RBP	6.63	□□□□□ -1.35
CD44-231	ENST00000531110	CSF2RB	P32927	897 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	CD83	Q01151	205 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	STRN3	Q13033	797 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	MOGS	Q13724	837 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	USP10	Q14694	798 aa	Known RBP	6.63	□□□□□ -1.35
CD44-231	ENST00000531110	DDB1	Q16531	1140 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	GJC2	Q5T442	439 aa	Predicted RBP	6.63	□□□□□ -1.35
CD44-231	ENST00000531110	KIAA1841	Q6NSI8	718 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	BMP8A	Q7Z5Y6	402 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	FILIP1	Q7Z7B0	1213 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	RASSF3	Q86WH2	238 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	NME8	Q8N427	588 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	NGEF	Q8N5V2	710 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	ERCC4	Q92889	916 aa	Predicted RBP	6.63	□□□□□ -1.35
CD44-231	ENST00000531110	TUBGCP5	Q96RT8	1024 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	PITHD1	Q9GZP4	211 aa	Predicted RBP	6.63	□□□□□ -1.35
CD44-231	ENST00000531110	UBA5	Q9GZZ9	404 aa		6.63	□□□□□ -1.35
CD44-231	ENST00000531110	PEG3	Q9GZU2	1588 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	OTOL1	A6NHN0	477 aa	Predicted RBP	6.62	□□□□□ -1.35
CD44-231	ENST00000531110	INHBB	P09529	407 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	POU3F3	P20264	500 aa	Predicted RBP	6.62	□□□□□ -1.35
CD44-231	ENST00000531110	CNGA1	P29973	690 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	SESN2	P58004	480 aa	Predicted RBP	6.62	□□□□□ -1.35
CD44-231	ENST00000531110	HMGN5	P82970	282 aa	Known RBP	6.62	□□□□□ -1.35
CD44-231	ENST00000531110	NFKB2	Q00653	900 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	MYBPC3	Q14896	1274 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	ZMAT1	Q5H9K5	638 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	RNF219	Q5W0B1	726 aa	Predicted RBP	6.62	□□□□□ -1.35
CD44-231	ENST00000531110	TRIM68	Q6AZZ1	485 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	FRMD7	Q6ZUT3	714 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	ESPNL	Q6ZVH7	1005 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	STRA8	Q7Z7C7	330 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	RALYL	Q86SE5	291 aa	Known RBP	6.62	□□□□□ -1.35
CD44-231	ENST00000531110	ZSCAN30	Q86W11	494 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	SYT8	Q8NBV8	401 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	CXorf38	Q8TB03	319 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	FEZF2	Q8TBJ5	459 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	SUDS3	Q9H7L9	328 aa	Predicted RBP	6.62	□□□□□ -1.35
CD44-231	ENST00000531110	JADE2	Q9NQC1	790 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	MCM8	Q9UJA3	840 aa		6.62	□□□□□ -1.35
CD44-231	ENST00000531110	DHX29	Q7Z478	1369 aa	Known RBP	6.61	□□□□□ -1.35
CD44-231	ENST00000531110	EXOC5	O00471	708 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	GPR39	O43194	453 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	B4GALT3	O60512	393 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	PRPF6	O94906	941 aa	Known RBP	6.61	□□□□□ -1.35
CD44-231	ENST00000531110	HMGCR	P04035	888 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	SARNP	P82979	210 aa	Known RBP	6.61	□□□□□ -1.35
CD44-231	ENST00000531110	ADCY2	Q08462	1091 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	DGKD	Q16760	1214 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	ICE2	Q659A1	982 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	OTOP2	Q7RTS6	562 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	KBTBD2	Q8IY47	623 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	UBR7	Q8N806	425 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	ZCRB1	Q8TBF4	217 aa	Known RBP	6.61	□□□□□ -1.35
CD44-231	ENST00000531110	TBC1D22A	Q8WUA7	517 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	RSAD2	Q8WXG1	361 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	RTF1	Q92541	710 aa	Known RBP	6.61	□□□□□ -1.35
CD44-231	ENST00000531110	LPP	Q93052	612 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	PPP1R9B	Q96SB3	815 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	CNOT11	Q9UKZ1	510 aa	Known RBP	6.61	□□□□□ -1.35
CD44-231	ENST00000531110	DENND2A	Q9ULE3	1009 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	SLC4A7	Q9Y6M7	1214 aa		6.61	□□□□□ -1.35
CD44-231	ENST00000531110	PRDM2	Q13029	1718 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	SETSIP	P0DME0	302 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	XRCC6	P12956	609 aa	Known RBP eCLIP	6.6	□□□□□ -1.35
CD44-231	ENST00000531110	HOXA5	P20719	270 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	GSC	P56915	257 aa	Predicted RBP	6.6	□□□□□ -1.35
CD44-231	ENST00000531110	STAT4	Q14765	748 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	CCDC178	Q5BJE1	867 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	BROX	Q5VW32	411 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	PRAMEF9	Q5VWM5	478 aa		6.6	□□□□□ -1.35
CD44-231	ENST00000531110	SASS6	Q6UVJ0	657 aa		6.6	□□□□□ -1.35

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