RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 TTC26A0AVF1 554 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 SFI1A8K8P3 1242 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 KRT9P35527 623 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 FKBP3Q00688 224 aaKnown RBP20.75■□□□□ 0.91
VPS28-207ENST00000526977 TARBP2Q15633 366 aaKnown RBP20.75■□□□□ 0.91
VPS28-207ENST00000526977 RAD9BQ6WBX8 426 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 SFR1Q86XK3 245 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 TRIM50Q86XT4 487 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 NELFCDQ8IXH7 590 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 RAET1EQ8TD07 263 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 ATP6V0A4Q9HBG4 840 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 ZNF215Q9UL58 517 aaPredicted RBP20.75■□□□□ 0.91
VPS28-207ENST00000526977 CASP8AP2Q9UKL3 1982 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 PCNTO95613 3336 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 ADCY3O60266 1144 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 HBP1O60381 514 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 DUSP11O75319 330 aaKnown RBP20.74■□□□□ 0.91
VPS28-207ENST00000526977 GTF2F1P35269 517 aaKnown RBP eCLIP20.74■□□□□ 0.91
VPS28-207ENST00000526977 RFC5P40937 340 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 CPT1AP50416 773 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 MAPK7Q13164 816 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 PLCB4Q15147 1175 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 VWA3BQ502W6 1294 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 DAW1Q8N136 415 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 SLC7A3Q8WY07 619 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 KIFAP3Q92845 792 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 MRPL44Q9H9J2 332 aaKnown RBP20.74■□□□□ 0.91
VPS28-207ENST00000526977 C17orf75Q9HAS0 396 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 CAPN11Q9UMQ6 739 aa20.74■□□□□ 0.91
VPS28-207ENST00000526977 MARK3P27448 753 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 CASP5P51878 434 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 POLGP54098 1239 aaPredicted RBP20.73■□□□□ 0.91
VPS28-207ENST00000526977 CACNB2Q08289 660 aaPredicted RBP20.73■□□□□ 0.91
VPS28-207ENST00000526977 SYCP1Q15431 976 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 ODR4Q5SWX8 454 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 MAEAQ7L5Y9 396 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 TRPV1Q8NER1 839 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 ERGIC2Q96RQ1 377 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 C16orf70Q9BSU1 422 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 DHX33Q9H6R0 707 aaKnown RBP20.73■□□□□ 0.91
VPS28-207ENST00000526977 POLD4Q9HCU8 107 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 KCNG1Q9UIX4 513 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 SEPT4O43236 478 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 TUBB4AP04350 444 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 MAPTP10636 758 aaKnown RBP20.73■□□□□ 0.91
VPS28-207ENST00000526977 PLS3P13797 630 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 FAM102BQ5T8I3 360 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 EPM2AIP1Q7L775 607 aaPredicted RBP20.73■□□□□ 0.91
VPS28-207ENST00000526977 KIF18AQ8NI77 898 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 CEP89Q96ST8 783 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 NDST4Q9H3R1 872 aa20.73■□□□□ 0.91
VPS28-207ENST00000526977 H3BRB1 525 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 DYNC1I1O14576 645 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 HMGCRP04035 888 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 KLK7P49862 253 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 RTP1P59025 263 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 MAN2A1Q16706 1144 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 TRIM65Q6PJ69 517 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 STXBP4Q6ZWJ1 553 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 TMTC1Q8IUR5 882 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 FAM178BQ8IXR5 827 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 SLC17A8Q8NDX2 589 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 DESI2Q9BSY9 194 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 TUT1Q9H6E5 874 aaKnown RBP20.72■□□□□ 0.91
VPS28-207ENST00000526977 TRPC6Q9Y210 931 aa20.72■□□□□ 0.91
VPS28-207ENST00000526977 LUC7L2Q9Y383 392 aaKnown RBP20.72■□□□□ 0.91
VPS28-207ENST00000526977 ELNP15502 786 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 CNGA1P29973 690 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 HOXD13P35453 343 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 FKBP15Q5T1M5 1219 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 OR8K1Q8NGG5 319 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 CEP63Q96MT8 703 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 NUP58Q9BVL2 599 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 TTYH3Q9C0H2 523 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 MAFO75444 373 aaPredicted RBP20.71■□□□□ 0.91
VPS28-207ENST00000526977 ETF1P62495 437 aaKnown RBP20.71■□□□□ 0.91
VPS28-207ENST00000526977 EMC2Q15006 297 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 ZNF484Q5JVG2 852 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 SYT10Q6XYQ8 523 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 ZNF720Q7Z2F6 126 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 RETREG2Q8NC44 543 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 JPH2Q9BR39 696 aaPredicted RBP20.71■□□□□ 0.91
VPS28-207ENST00000526977 RNPEPQ9H4A4 650 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 WBP1LQ9NX94 342 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 ADGRG1Q9Y653 693 aa20.71■□□□□ 0.91
VPS28-207ENST00000526977 EIF3DO15371 548 aaKnown RBP eCLIP20.7■□□□□ 0.9
VPS28-207ENST00000526977 GAS2O43903 313 aaKnown RBP20.7■□□□□ 0.9
VPS28-207ENST00000526977 PRKAR2AP13861 404 aaKnown RBP20.7■□□□□ 0.9
VPS28-207ENST00000526977 ZC3H3Q8IXZ2 948 aaKnown RBP20.7■□□□□ 0.9
VPS28-207ENST00000526977 FIZ1Q96SL8 496 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 DNAJC7Q99615 494 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 SPC25Q9HBM1 224 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 XPNPEP1Q9NQW7 623 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 PCDHB13Q9Y5F0 798 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 GOLGA6L9A6NEM1 432 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 GCNT3O95395 438 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 ZNF286BP0CG31 522 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 MYBP10242 640 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 SMTNP53814 917 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 GJA9P57773 515 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms