RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 NOLC1Q14978 699 aaKnown RBP eCLIP5.95□□□□□ -1.46
CD44-220ENST00000525688 TARBP2Q15633 366 aaKnown RBP5.95□□□□□ -1.46
CD44-220ENST00000525688 SKIDA1Q1XH10 827 aa5.95□□□□□ -1.46
CD44-220ENST00000525688 CCDC178Q5BJE1 867 aa5.95□□□□□ -1.46
CD44-220ENST00000525688 MBNL2Q5VZF2 373 aaKnown RBP5.95□□□□□ -1.46
CD44-220ENST00000525688 LRSAM1Q6UWE0 723 aa5.95□□□□□ -1.46
CD44-220ENST00000525688 CXXC5Q7LFL8 322 aaKnown RBP5.95□□□□□ -1.46
CD44-220ENST00000525688 CNPY4Q8N129 248 aa5.95□□□□□ -1.46
CD44-220ENST00000525688 PNISRQ8TF01 805 aaKnown RBP5.95□□□□□ -1.46
CD44-220ENST00000525688 TSPEARQ8WU66 669 aa5.95□□□□□ -1.46
CD44-220ENST00000525688 OR10A5Q9H207 317 aa5.95□□□□□ -1.46
CD44-220ENST00000525688 SLC12A5Q9H2X9 1139 aa5.95□□□□□ -1.46
CD44-220ENST00000525688 ARNT2Q9HBZ2 717 aa5.95□□□□□ -1.46
CD44-220ENST00000525688 PRDM11Q9NQV5 511 aa5.95□□□□□ -1.46
CD44-220ENST00000525688 ANLNQ9NQW6 1124 aa5.95□□□□□ -1.46
CD44-220ENST00000525688 OPHN1O60890 802 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 NDUFS2O75306 463 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 PAPLNO95428 1278 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 KRT18P05783 430 aaKnown RBP5.94□□□□□ -1.46
CD44-220ENST00000525688 CYP2C8P10632 490 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 OSMP13725 252 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 ITGB5P18084 799 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 NFATC3Q12968 1075 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 SPIDRQ14159 915 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 GBX1Q14549 363 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 MAP9Q49MG5 647 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 KANK2Q63ZY3 851 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 B3GNT9Q6UX72 402 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 KRBA2Q6ZNG9 492 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 B3GNT8Q7Z7M8 397 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 FAM9BQ8IZU0 186 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 OR14C36Q8NHC7 312 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 RUNDC1Q96C34 613 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 RPS6KC1Q96S38 1066 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 HAPLN2Q9GZV7 340 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 MTG2Q9H4K7 406 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 IFT122Q9HBG6 1241 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 ZFP64Q9NPA5 681 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 KCMF1Q9P0J7 381 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 DPP7Q9UHL4 492 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 TUBD1Q9UJT1 453 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 PCDHA5Q9Y5H7 936 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 CDY2AQ9Y6F7 541 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 RPS6KL1Q9Y6S9 549 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 ABCA5Q8WWZ7 1642 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 GRIN2BQ13224 1484 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 GAPVD1Q14C86 1478 aa5.94□□□□□ -1.46
CD44-220ENST00000525688 ZNF503-AS2A6NEH8 195 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 VSTM5A8MXK1 200 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 CUTAO60888 179 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 IL18BPO95998 194 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 POU2F2P09086 479 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 ATF2P15336 505 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 HSPA6P17066 643 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 MCCP23508 829 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 ATAT1Q5SQI0 421 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 TMC5Q6UXY8 1006 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 DPP8Q6V1X1 898 aaPredicted RBP5.93□□□□□ -1.46
CD44-220ENST00000525688 BMP8AQ7Z5Y6 402 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 ZNF605Q86T29 641 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 LDHDQ86WU2 507 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 MIER2Q8N344 545 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 CDYL2Q8N8U2 506 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 SLC35G2Q8TBE7 412 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 SLC2A13Q96QE2 648 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 CNTD2Q9H8S5 307 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 NMRK2Q9NPI5 230 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 GNL3LQ9NVN8 582 aaKnown RBP5.93□□□□□ -1.46
CD44-220ENST00000525688 SIRT5Q9NXA8 310 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 ARHGAP20Q9P2F6 1191 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 FTSJ1Q9UET6 329 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 RCAN3Q9UKA8 241 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 PCDHB6Q9Y5E3 794 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 SNAPC4Q5SXM2 1469 aa5.93□□□□□ -1.46
CD44-220ENST00000525688 MAGI1Q96QZ7 1491 aaPredicted RBP5.93□□□□□ -1.46
CD44-220ENST00000525688 SCO2A0A1W2PP80 73 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 PCDH8O95206 1070 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 MYL1P05976 194 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 CELA3BP08861 270 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 PFKLP17858 780 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 IGFBP6P24592 240 aaPredicted RBP5.92□□□□□ -1.46
CD44-220ENST00000525688 ITGA1P56199 1179 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 IL13RA1P78552 427 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 C11orf96Q7Z7L8 435 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 THEMISQ8N1K5 641 aaPredicted RBP5.92□□□□□ -1.46
CD44-220ENST00000525688 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.92□□□□□ -1.46
CD44-220ENST00000525688 FBXO41Q8TF61 875 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 GAB3Q8WWW8 586 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 FATE1Q969F0 183 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 COA7Q96BR5 231 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 WRNIP1Q96S55 665 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 KCND1Q9NSA2 647 aa5.92□□□□□ -1.46
CD44-220ENST00000525688 MBD1Q9UIS9 605 aaPredicted RBP5.92□□□□□ -1.46
CD44-220ENST00000525688 TEX51A0A1B0GUA7 166 aa5.91□□□□□ -1.46
CD44-220ENST00000525688 MYOCOSA0A1B0GUC4 107 aa5.91□□□□□ -1.46
CD44-220ENST00000525688 OFD1O75665 1012 aa5.91□□□□□ -1.46
CD44-220ENST00000525688 WDHD1O75717 1129 aaPredicted RBP5.91□□□□□ -1.46
CD44-220ENST00000525688 CHGBP05060 677 aa5.91□□□□□ -1.46
CD44-220ENST00000525688 JUNBP17275 347 aaPredicted RBP5.91□□□□□ -1.46
CD44-220ENST00000525688 MC3RP41968 323 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms