RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 ERLIN2O94905 339 aa18.18■□□□□ 0.5
SF3A1-209ENST00000496189 F13A1P00488 732 aa18.18■□□□□ 0.5
SF3A1-209ENST00000496189 SKIP12755 728 aa18.18■□□□□ 0.5
SF3A1-209ENST00000496189 IGFBP4P22692 258 aa18.18■□□□□ 0.5
SF3A1-209ENST00000496189 BTG3Q14201 252 aaPredicted RBP18.18■□□□□ 0.5
SF3A1-209ENST00000496189 PCBP1Q15365 356 aaKnown RBP eCLIP18.18■□□□□ 0.5
SF3A1-209ENST00000496189 FOXD4L5Q5VV16 416 aaPredicted RBP18.18■□□□□ 0.5
SF3A1-209ENST00000496189 PADI6Q6TGC4 694 aa18.18■□□□□ 0.5
SF3A1-209ENST00000496189 KSR1Q8IVT5 923 aa18.18■□□□□ 0.5
SF3A1-209ENST00000496189 FOXD4L4Q8WXT5 416 aaPredicted RBP18.18■□□□□ 0.5
SF3A1-209ENST00000496189 CALML4Q96GE6 196 aa18.18■□□□□ 0.5
SF3A1-209ENST00000496189 CERS4Q9HA82 394 aa18.18■□□□□ 0.5
SF3A1-209ENST00000496189 PIN4Q9Y237 131 aaKnown RBP18.18■□□□□ 0.5
SF3A1-209ENST00000496189 LONP1P36776 959 aaKnown RBP18.17■□□□□ 0.5
SF3A1-209ENST00000496189 UBA7P41226 1012 aa18.17■□□□□ 0.5
SF3A1-209ENST00000496189 POU5F1BQ06416 359 aa18.17■□□□□ 0.5
SF3A1-209ENST00000496189 FAM102BQ5T8I3 360 aa18.17■□□□□ 0.5
SF3A1-209ENST00000496189 TWF2Q6IBS0 349 aaKnown RBP18.17■□□□□ 0.5
SF3A1-209ENST00000496189 RTN4RL1Q86UN2 441 aaPredicted RBP18.17■□□□□ 0.5
SF3A1-209ENST00000496189 ABI1Q8IZP0 508 aa18.17■□□□□ 0.5
SF3A1-209ENST00000496189 SP7Q8TDD2 431 aaPredicted RBP18.17■□□□□ 0.5
SF3A1-209ENST00000496189 LINC01599Q8WXQ3 324 aa18.17■□□□□ 0.5
SF3A1-209ENST00000496189 POLR3FQ9H1D9 316 aaPredicted RBP18.17■□□□□ 0.5
SF3A1-209ENST00000496189 BHMT2Q9H2M3 363 aa18.17■□□□□ 0.5
SF3A1-209ENST00000496189 ELAC1Q9H777 363 aaKnown RBP18.17■□□□□ 0.5
SF3A1-209ENST00000496189 XPNPEP1Q9NQW7 623 aa18.17■□□□□ 0.5
SF3A1-209ENST00000496189 TMEM161AQ9NX61 479 aa18.17■□□□□ 0.5
SF3A1-209ENST00000496189 MTUS1Q9ULD2 1270 aa18.17■□□□□ 0.5
SF3A1-209ENST00000496189 ATP6V1DQ9Y5K8 247 aa18.17■□□□□ 0.5
SF3A1-209ENST00000496189 A0A087WWV3 80 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 INO80B-WBP1J3KQ70 363 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 SLC26A4O43511 780 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 MGEA5O60502 916 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 CSDE1O75534 798 aaKnown RBP18.16■□□□□ 0.5
SF3A1-209ENST00000496189 DGKIO75912 1065 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 EYA4O95677 639 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 FGFR4P22455 802 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 ERVK-21P61565 698 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 PPP2R5AQ15172 486 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 ATL3Q6DD88 541 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 MAEAQ7L5Y9 396 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 ZBTB8OSQ8IWT0 167 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 FBXO22Q8NEZ5 403 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 IFT74Q96LB3 600 aa18.16■□□□□ 0.5
SF3A1-209ENST00000496189 COL4A6Q14031 1691 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 LRRIQ4A6NIV6 560 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 PP2D1A8MPX8 630 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 C9IYK1 514 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 CYP11B2P19099 503 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 CDC25AP30304 524 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 TXLNAP40222 546 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 RAB27AP51159 221 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 NUCB2P80303 420 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 DSC3Q14574 896 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 FAM173BQ6P4H8 233 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 CABP7Q86V35 215 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 CMTR2Q8IYT2 770 aaKnown RBP18.15■□□□□ 0.5
SF3A1-209ENST00000496189 RNF169Q8NCN4 708 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 MAFAQ8NHW3 353 aaPredicted RBP18.15■□□□□ 0.5
SF3A1-209ENST00000496189 KIFAP3Q92845 792 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 C2orf40Q9H1Z8 148 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 IFT122Q9HBG6 1241 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 CLIC4Q9Y696 253 aa18.15■□□□□ 0.5
SF3A1-209ENST00000496189 BRD1O95696 1058 aa18.14■□□□□ 0.49
SF3A1-209ENST00000496189 SSBP05455 408 aaKnown RBP eCLIP18.14■□□□□ 0.49
SF3A1-209ENST00000496189 AXLP30530 894 aa18.14■□□□□ 0.49
SF3A1-209ENST00000496189 CTNNB1P35222 781 aa18.14■□□□□ 0.49
SF3A1-209ENST00000496189 ARL2P36404 184 aa18.14■□□□□ 0.49
SF3A1-209ENST00000496189 CEBPZQ03701 1054 aaKnown RBP18.14■□□□□ 0.49
SF3A1-209ENST00000496189 PKP1Q13835 747 aa18.14■□□□□ 0.49
SF3A1-209ENST00000496189 IL17AQ16552 155 aa18.14■□□□□ 0.49
SF3A1-209ENST00000496189 SPOUT1Q5T280 376 aaKnown RBP18.14■□□□□ 0.49
SF3A1-209ENST00000496189 RSPH1Q8WYR4 309 aa18.14■□□□□ 0.49
SF3A1-209ENST00000496189 CFAP45Q9UL16 551 aa18.14■□□□□ 0.49
SF3A1-209ENST00000496189 TTC3P53804 2025 aa18.14■□□□□ 0.49
SF3A1-209ENST00000496189 A0A0U1RQF3 1178 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 TBKBP1A7MCY6 615 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 E9PMD0 336 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 EOMESO95936 686 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 PTENP60484 403 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 CAPSQ13938 189 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 STK38Q15208 465 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 TMEM132AQ24JP5 1023 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 PAN2Q504Q3 1202 aaKnown RBP18.13■□□□□ 0.49
SF3A1-209ENST00000496189 TMEM192Q8IY95 271 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 DEPTORQ8TB45 409 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 ASAP3Q8TDY4 903 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 ZNF689Q96CS4 500 aaPredicted RBP18.13■□□□□ 0.49
SF3A1-209ENST00000496189 USP28Q96RU2 1077 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 TIPINQ9BVW5 301 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 NFKBIZQ9BYH8 718 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 AAASQ9NRG9 546 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 AGPAT5Q9NUQ2 364 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 KCNG1Q9UIX4 513 aa18.13■□□□□ 0.49
SF3A1-209ENST00000496189 ARHGEF15O94989 841 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 RB1P06400 928 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 GLRA2P23416 452 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 FAM189BP81408 668 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 SLC39A14Q15043 492 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 ECM1Q16610 540 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms