RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 ZBTB39O15060 712 aa23.69■■□□□ 1.38
HMGB3-205ENST00000455596 BMP1P13497 986 aa23.69■■□□□ 1.38
HMGB3-205ENST00000455596 ZNF174Q15697 407 aa23.69■■□□□ 1.38
HMGB3-205ENST00000455596 TCEAL5Q5H9L2 206 aa23.69■■□□□ 1.38
HMGB3-205ENST00000455596 TTC38Q5R3I4 469 aa23.69■■□□□ 1.38
HMGB3-205ENST00000455596 KLHL23Q8NBE8 558 aa23.69■■□□□ 1.38
HMGB3-205ENST00000455596 UBE2ZQ9H832 354 aaPredicted RBP23.69■■□□□ 1.38
HMGB3-205ENST00000455596 ALG13Q9NP73 1137 aaKnown RBP23.69■■□□□ 1.38
HMGB3-205ENST00000455596 NOL7Q9UMY1 257 aaKnown RBP23.69■■□□□ 1.38
HMGB3-205ENST00000455596 KIF3AQ9Y496 699 aa23.69■■□□□ 1.38
HMGB3-205ENST00000455596 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.68■■□□□ 1.38
HMGB3-205ENST00000455596 A0A0U1RQF3 1178 aa23.68■■□□□ 1.38
HMGB3-205ENST00000455596 OR52Z1P0C646 297 aa23.68■■□□□ 1.38
HMGB3-205ENST00000455596 ABI1Q8IZP0 508 aa23.68■■□□□ 1.38
HMGB3-205ENST00000455596 PRPF31Q8WWY3 499 aaKnown RBP23.68■■□□□ 1.38
HMGB3-205ENST00000455596 TMEM117Q9H0C3 514 aa23.68■■□□□ 1.38
HMGB3-205ENST00000455596 IFT122Q9HBG6 1241 aa23.68■■□□□ 1.38
HMGB3-205ENST00000455596 ANKEF1Q9NU02 776 aa23.68■■□□□ 1.38
HMGB3-205ENST00000455596 PCDHB12Q9Y5F1 795 aa23.68■■□□□ 1.38
HMGB3-205ENST00000455596 ASAP2O43150 1006 aa23.67■■□□□ 1.38
HMGB3-205ENST00000455596 EOMESO95936 686 aa23.67■■□□□ 1.38
HMGB3-205ENST00000455596 ITGB1P05556 798 aa23.67■■□□□ 1.38
HMGB3-205ENST00000455596 TRAPPC10P48553 1259 aa23.67■■□□□ 1.38
HMGB3-205ENST00000455596 CATSPER4Q7RTX7 472 aa23.67■■□□□ 1.38
HMGB3-205ENST00000455596 RNF169Q8NCN4 708 aa23.67■■□□□ 1.38
HMGB3-205ENST00000455596 TMX3Q96JJ7 454 aa23.67■■□□□ 1.38
HMGB3-205ENST00000455596 CCDC43Q96MW1 224 aaKnown RBP23.67■■□□□ 1.38
HMGB3-205ENST00000455596 UHRF1Q96T88 793 aaPredicted RBP23.67■■□□□ 1.38
HMGB3-205ENST00000455596 TYW1Q9NV66 732 aaKnown RBP23.67■■□□□ 1.38
HMGB3-205ENST00000455596 PIN4Q9Y237 131 aaKnown RBP23.67■■□□□ 1.38
HMGB3-205ENST00000455596 SRGAP2CP0DJJ0 459 aa23.66■■□□□ 1.38
HMGB3-205ENST00000455596 U2AF2P26368 475 aaKnown RBP eCLIP23.66■■□□□ 1.38
HMGB3-205ENST00000455596 TECP42680 631 aa23.66■■□□□ 1.38
HMGB3-205ENST00000455596 MCM2P49736 904 aa23.66■■□□□ 1.38
HMGB3-205ENST00000455596 LAMTOR4Q0VGL1 99 aa23.66■■□□□ 1.38
HMGB3-205ENST00000455596 TWF2Q6IBS0 349 aaKnown RBP23.66■■□□□ 1.38
HMGB3-205ENST00000455596 SRGAP1Q7Z6B7 1085 aa23.66■■□□□ 1.38
HMGB3-205ENST00000455596 FERMT3Q86UX7 667 aa23.66■■□□□ 1.38
HMGB3-205ENST00000455596 SPPL3Q8TCT6 385 aa23.66■■□□□ 1.38
HMGB3-205ENST00000455596 TBC1D32Q96NH3 1257 aa23.66■■□□□ 1.38
HMGB3-205ENST00000455596 CASD1Q96PB1 797 aa23.66■■□□□ 1.38
HMGB3-205ENST00000455596 TUFT1Q9NNX1 390 aa23.66■■□□□ 1.38
HMGB3-205ENST00000455596 RNF19AQ9NV58 838 aa23.66■■□□□ 1.38
HMGB3-205ENST00000455596 MYO7AQ13402 2215 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 BRWD1Q9NSI6 2320 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 DGAT1O75907 488 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 CSPG5O95196 566 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 CD2BP2O95400 341 aaKnown RBP23.65■■□□□ 1.38
HMGB3-205ENST00000455596 SKIP12755 728 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 XRCC6P12956 609 aaKnown RBP eCLIP23.65■■□□□ 1.38
HMGB3-205ENST00000455596 LAG3P18627 525 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 RARRES1P49788 294 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 CSPP1Q1MSJ5 1256 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 ZNF598Q86UK7 904 aaKnown RBP23.65■■□□□ 1.38
HMGB3-205ENST00000455596 LRRC43Q8N309 656 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 COLGALT1Q8NBJ5 622 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 ERMNQ8TAM6 284 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 TRAIPQ9BWF2 469 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 CWH43Q9H720 699 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 XPNPEP1Q9NQW7 623 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 HCSTQ9UBK5 93 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 A0A0C4DFX4 3053 aa23.65■■□□□ 1.38
HMGB3-205ENST00000455596 TNFRSF10AO00220 468 aa23.64■■□□□ 1.37
HMGB3-205ENST00000455596 SPATA31C1P0DKV0 1188 aa23.64■■□□□ 1.37
HMGB3-205ENST00000455596 KCNA5P22460 613 aa23.64■■□□□ 1.37
HMGB3-205ENST00000455596 PHKA2P46019 1235 aa23.64■■□□□ 1.37
HMGB3-205ENST00000455596 CAMK1Q14012 370 aa23.64■■□□□ 1.37
HMGB3-205ENST00000455596 MXD4Q14582 209 aaPredicted RBP23.64■■□□□ 1.37
HMGB3-205ENST00000455596 RNF149Q8NC42 400 aa23.64■■□□□ 1.37
HMGB3-205ENST00000455596 PIGOQ8TEQ8 1089 aa23.64■■□□□ 1.37
HMGB3-205ENST00000455596 POF1BQ8WVV4 589 aa23.64■■□□□ 1.37
HMGB3-205ENST00000455596 PABPC5Q96DU9 382 aaKnown RBP23.64■■□□□ 1.37
HMGB3-205ENST00000455596 NCK2O43639 380 aa23.63■■□□□ 1.37
HMGB3-205ENST00000455596 ATF7P17544 494 aaPredicted RBP23.63■■□□□ 1.37
HMGB3-205ENST00000455596 DNAJB1P25685 340 aa23.63■■□□□ 1.37
HMGB3-205ENST00000455596 UBE3AQ05086 875 aa23.63■■□□□ 1.37
HMGB3-205ENST00000455596 LEXMQ3ZCV2 418 aa23.63■■□□□ 1.37
HMGB3-205ENST00000455596 CLLU1OSQ5K130 101 aa23.63■■□□□ 1.37
HMGB3-205ENST00000455596 CATSPER3Q86XQ3 398 aa23.63■■□□□ 1.37
HMGB3-205ENST00000455596 THNSL1Q8IYQ7 743 aa23.63■■□□□ 1.37
HMGB3-205ENST00000455596 POLR3CQ9BUI4 534 aaPredicted RBP23.63■■□□□ 1.37
HMGB3-205ENST00000455596 AGPAT5Q9NUQ2 364 aa23.63■■□□□ 1.37
HMGB3-205ENST00000455596 FAM105AQ9NUU6 356 aa23.63■■□□□ 1.37
HMGB3-205ENST00000455596 MED24O75448 989 aa23.62■■□□□ 1.37
HMGB3-205ENST00000455596 RAB27AP51159 221 aa23.62■■□□□ 1.37
HMGB3-205ENST00000455596 TFDP1Q14186 410 aa23.62■■□□□ 1.37
HMGB3-205ENST00000455596 NBR1Q14596 966 aa23.62■■□□□ 1.37
HMGB3-205ENST00000455596 LRRC55Q6ZSA7 311 aa23.62■■□□□ 1.37
HMGB3-205ENST00000455596 EP400NLQ6ZTU2 488 aa23.62■■□□□ 1.37
HMGB3-205ENST00000455596 HELQQ8TDG4 1101 aa23.62■■□□□ 1.37
HMGB3-205ENST00000455596 PPP2R3CQ969Q6 453 aa23.62■■□□□ 1.37
HMGB3-205ENST00000455596 MINDY3Q9H8M7 445 aa23.62■■□□□ 1.37
HMGB3-205ENST00000455596 A0A087WWV3 80 aa23.61■■□□□ 1.37
HMGB3-205ENST00000455596 FGF18O76093 207 aa23.61■■□□□ 1.37
HMGB3-205ENST00000455596 RPA1P27694 616 aa23.61■■□□□ 1.37
HMGB3-205ENST00000455596 GJB2P29033 226 aa23.61■■□□□ 1.37
HMGB3-205ENST00000455596 COL19A1Q14993 1142 aa23.61■■□□□ 1.37
HMGB3-205ENST00000455596 RSPH1Q8WYR4 309 aa23.61■■□□□ 1.37
HMGB3-205ENST00000455596 NACC1Q96RE7 527 aa23.61■■□□□ 1.37
HMGB3-205ENST00000455596 MRPL9Q9BYD2 267 aaKnown RBP23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms