RNA–Protein interactions for RNA: ENST00000449544.5

HCG18-238, Transcript of HLA complex group 18, human

TSL 2 BASIC

Gene HCG18, Length 4,262 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCG18-238	ENST00000449544	SMIM22	K7EJ46	135 aa		9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	NNMT	P40261	264 aa		9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	HSP90AA4P	Q58FG1	418 aa		9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	ZNF467	Q7Z7K2	595 aa	Predicted RBP	9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	PALB2	Q86YC2	1186 aa		9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	DCP1B	Q8IZD4	617 aa	Known RBP	9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	NSUN7	Q8NE18	718 aa	Known RBP	9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	TGS1	Q96RS0	853 aa	Known RBP	9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	PRDM12	Q9H4Q4	367 aa		9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	RIOX1	Q9H6W3	641 aa		9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	CYP4F11	Q9HBI6	524 aa		9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	CYP26B1	Q9NR63	512 aa		9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	HCN4	Q9Y3Q4	1203 aa		9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	BAZ2B	Q9UIF8	2168 aa	Known RBP	9.21	□□□□□ -0.93
HCG18-238	ENST00000449544	TBX3	O15119	743 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	CBFA2T2	O43439	604 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	MCM6	Q14566	821 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	ATF7IP2	Q5U623	682 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	SPATA2L	Q8IUW3	424 aa	Predicted RBP	9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	RYBP	Q8N488	228 aa	Predicted RBP	9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	HASPIN	Q8TF76	798 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	NSMCE1	Q8WV22	266 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	MRPS31	Q92665	395 aa	Known RBP	9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	ZNF333	Q96JL9	665 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	SLC9A7	Q96T83	725 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	IL23A	Q9NPF7	189 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	SYNJ2BP-COX16	A0A087WUM0	186 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	SOWAHB	A6NEL2	793 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	PLA2G6	O60733	806 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	UQCRH	P07919	91 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	MYL4	P12829	197 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	FGFR4	P22455	802 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	CIITA	P33076	1130 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	ALCAM	Q13740	583 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	HSDL1	Q3SXM5	330 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	TIGD5	Q53EQ6	642 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	STOX1	Q6ZVD7	989 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	SIX6OS1	Q8N1H7	587 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	FAM133A	Q8N9E0	248 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	CSGALNACT1	Q8TDX6	532 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	RIPOR3	Q96MK2	946 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	COX16	Q9P0S2	106 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	STK17A	Q9UEE5	414 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	STRIP2	Q9ULQ0	834 aa		9.21	□□□□□ -0.94
HCG18-238	ENST00000449544	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	9.21	□□□□□ -0.94
HCG18-238	ENST00000449544		E9PMD0	336 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	AVPR1A	P37288	418 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	SPAG1	Q07617	926 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	GLRA4	Q5JXX5	417 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	FAM171A1	Q5VUB5	890 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	CNKSR3	Q6P9H4	555 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	SYMPK	Q92797	1274 aa	Known RBP	9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	INTS4	Q96HW7	963 aa	Known RBP	9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	BCCIP	Q9P287	314 aa	Known RBP eCLIP	9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	SYNRG	Q9UMZ2	1314 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	CKM	P06732	381 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	XRCC6	P12956	609 aa	Known RBP eCLIP	9.2	□□□□□ -0.94	1e-10	■■■■■ 44.1
HCG18-238	ENST00000449544	GJC1	P36383	396 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	SREBF1	P36956	1147 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	PTK7	Q13308	1070 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	KCNB1	Q14721	858 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	PPP2R5D	Q14738	602 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	CTXN3	Q4LDR2	81 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	SCARA5	Q6ZMJ2	495 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	CCAR2	Q8N163	923 aa	Known RBP	9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	NKX2-4	Q9H2Z4	354 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	SENP2	Q9HC62	589 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	SLC39A2	Q9NP94	309 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	TMEM265	A0A087WTH1	108 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	ESYT2	A0FGR8	921 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	PABPN1L	A6NDY0	278 aa	Known RBP	9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	RFC2	P35250	354 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	GPC3	P51654	580 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	FAM177A1	Q8N128	213 aa	Predicted RBP	9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	CSGALNACT2	Q8N6G5	542 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	CPLX3	Q8WVH0	158 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	ZBED3	Q96IU2	234 aa	Predicted RBP	9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	ZMYND12	Q9H0C1	365 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	TUFT1	Q9NNX1	390 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	GJB4	Q9NTQ9	266 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	ANKEF1	Q9NU02	776 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	LSM7	Q9UK45	103 aa	Known RBP	9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	ST3GAL5	Q9UNP4	418 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	COMMD10	Q9Y6G5	202 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	SLX4	Q8IY92	1834 aa		9.2	□□□□□ -0.94
HCG18-238	ENST00000449544	TREH	O43280	583 aa		9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	CD4	P01730	458 aa		9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	GBP1	P32455	592 aa		9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	RECQL	P46063	649 aa	Predicted RBP	9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	BTNL9	Q6UXG8	535 aa		9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	SRGAP1	Q7Z6B7	1085 aa		9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	PPM1K	Q8N3J5	372 aa		9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	SECISBP2L	Q93073	1101 aa	Known RBP	9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	FAM213A	Q9BRX8	229 aa		9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	AGO4	Q9HCK5	861 aa	Known RBP	9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	ARMCX3	Q9UH62	379 aa	Predicted RBP	9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	MRPS23	Q9Y3D9	190 aa	Known RBP	9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	MARF1	Q9Y4F3	1742 aa	Known RBP	9.19	□□□□□ -0.94
HCG18-238	ENST00000449544	ADGRA2	Q96PE1	1338 aa		9.19	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms