RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 KNOP1Q1ED39 458 aaKnown RBP17.3■□□□□ 0.36
CHMP1A-201ENST00000397901 SLC30A9Q6PML9 568 aa17.3■□□□□ 0.36
CHMP1A-201ENST00000397901 FRMD5Q7Z6J6 570 aa17.3■□□□□ 0.36
CHMP1A-201ENST00000397901 DAAM2Q86T65 1068 aa17.3■□□□□ 0.36
CHMP1A-201ENST00000397901 AGAP11Q8TF27 550 aa17.3■□□□□ 0.36
CHMP1A-201ENST00000397901 U2AF1L4Q8WU68 220 aaKnown RBP17.3■□□□□ 0.36
CHMP1A-201ENST00000397901 REEP2Q9BRK0 252 aa17.3■□□□□ 0.36
CHMP1A-201ENST00000397901 DDX4Q9NQI0 724 aaKnown RBP17.3■□□□□ 0.36
CHMP1A-201ENST00000397901 ATF5Q9Y2D1 282 aaPredicted RBP17.3■□□□□ 0.36
CHMP1A-201ENST00000397901 BZW2Q9Y6E2 419 aaKnown RBP17.3■□□□□ 0.36
CHMP1A-201ENST00000397901 H2AFZP0C0S5 128 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 ZBTB48P10074 688 aaPredicted RBP17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 CASP4P49662 377 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 GIT2Q14161 759 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 H2AFVQ71UI9 128 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 CATSPER3Q86XQ3 398 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 MFN1Q8IWA4 741 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 TRIM31Q9BZY9 425 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 KCNMB3Q9NPA1 279 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 ARFGEF1Q9Y6D6 1849 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 A6NHS1 94 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 PHF20L1A8MW92 1017 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 DCDC2CA8MYV0 355 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 RSPH10B2B2RC85 870 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 CLIC2O15247 247 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 RSPH10BP0C881 870 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 GTF2IP78347 998 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 MKRN4PQ13434 485 aaPredicted RBP17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 EPHA7Q15375 998 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 BORCS6Q96GS4 357 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 ANO3Q9BYT9 981 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 GCNT4Q9P109 453 aa17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 NOVA2Q9UNW9 492 aaKnown RBP17.29■□□□□ 0.36
CHMP1A-201ENST00000397901 DIAPH2O60879 1101 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 GFPT2O94808 682 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 CCND1P24385 295 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 SNX1Q13596 522 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 PRR16Q569H4 304 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 CHMP6Q96FZ7 201 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 LRRC4CQ9HCJ2 640 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 CNOT8Q9UFF9 292 aaKnown RBP17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 TRAF3IP3Q9Y228 551 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 QSER1Q2KHR3 1735 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 ATAD5Q96QE3 1844 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 DDX3XO00571 662 aaKnown RBP eCLIP17.28■□□□□ 0.362e-9■■■■□ 26.7
CHMP1A-201ENST00000397901 LINGO3P0C6S8 592 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 FERP16591 822 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 DRAXINQ8NBI3 349 aaPredicted RBP17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 COA1Q9GZY4 146 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 SIX2Q9NPC8 291 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 PCDHB13Q9Y5F0 798 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 PITPNM2Q9BZ72 1349 aa17.28■□□□□ 0.36
CHMP1A-201ENST00000397901 RTN3O95197 1032 aaPredicted RBP17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 HMGB2P26583 209 aaKnown RBP17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 PRKCIP41743 596 aa17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 KCNA1Q09470 495 aa17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 ITIH4Q14624 930 aa17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 QRICH1Q2TAL8 776 aa17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 CWF19L1Q69YN2 538 aaKnown RBP17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 ADAT2Q7Z6V5 191 aaKnown RBP17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 TBC1D1Q86TI0 1168 aaPredicted RBP17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 VPS36Q86VN1 386 aa17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 AKT1S1Q96B36 256 aa17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 TRIM51Q9BSJ1 452 aa17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 MOV10L1Q9BXT6 1211 aaKnown RBP17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 IKZF4Q9H2S9 585 aa17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 CNOT10Q9H9A5 744 aaKnown RBP17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 SERPINB13Q9UIV8 391 aa17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 PCDHA1Q9Y5I3 950 aa17.27■□□□□ 0.36
CHMP1A-201ENST00000397901 CCDC188H7C350 402 aa17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 RIMBP2O15034 1052 aa17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 CALUO43852 315 aaPredicted RBP17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 CAND2O75155 1236 aa17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 NR3C1P04150 777 aa17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 CYP4A11Q02928 519 aa17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 DHX9Q08211 1270 aaKnown RBP17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 KRT71Q3SY84 523 aa17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 GPATCH4Q5T3I0 446 aaKnown RBP17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 NT5DC3Q86UY8 548 aa17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 COL23A1Q86Y22 540 aaPredicted RBP17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 NLGN1Q8N2Q7 840 aa17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 CENPTQ96BT3 561 aa17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 TMX4Q9H1E5 349 aaPredicted RBP17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 OSGEPQ9NPF4 335 aa17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 DNM3Q9UQ16 869 aa17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 STXBP5LQ9Y2K9 1186 aa17.27■□□□□ 0.35
CHMP1A-201ENST00000397901 GCNT3O95395 438 aa17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 SHMT1P34896 483 aa17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 PAPOLAP51003 745 aaKnown RBP17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 MAGOHP61326 146 aaKnown RBP17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 PRPF4BQ13523 1007 aaKnown RBP17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 TMC3Q7Z5M5 1100 aa17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 MAGOHBQ96A72 148 aaKnown RBP17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 NAP1L4Q99733 375 aaKnown RBP17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 ZFATQ9P243 1243 aa17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 SUCLA2Q9P2R7 463 aaPredicted RBP17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 SUGT1Q9Y2Z0 365 aa17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 NR2E1Q9Y466 385 aa17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 ASTN1O14525 1302 aa17.26■□□□□ 0.35
CHMP1A-201ENST00000397901 COL11A2P13942 1736 aaPredicted RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms