RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeastyeast

Gene RRP40, Length 723 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RRP40YOL142W SUP45P12385 437 aaKnown RBP9.02□□□□□ -0.97
RRP40YOL142W YPR084WQ06821 456 aa9.02□□□□□ -0.97
RRP40YOL142W SRC1Q03707 834 aa9.01□□□□□ -0.97
RRP40YOL142W CDC4P07834 779 aa8.99□□□□□ -0.97
RRP40YOL142W GUT2P32191 649 aa8.99□□□□□ -0.97
RRP40YOL142W ITT1Q04638 464 aa8.99□□□□□ -0.97
RRP40YOL142W MCM16Q12262 181 aa8.99□□□□□ -0.97
RRP40YOL142W ENO2P00925 437 aaKnown RBP8.98□□□□□ -0.97
RRP40YOL142W TIF1P10081 395 aaKnown RBP8.98□□□□□ -0.97
RRP40YOL142W RPL34BP40525 121 aaKnown RBP8.97□□□□□ -0.97
RRP40YOL142W MET32Q12041 191 aa8.97□□□□□ -0.97
RRP40YOL142W STE20Q03497 939 aaKnown RBP8.96□□□□□ -0.98
RRP40YOL142W FRA1Q07825 749 aa8.96□□□□□ -0.98
RRP40YOL142W TRK1P12685 1235 aa8.95□□□□□ -0.98
RRP40YOL142W ISF1P32488 338 aa8.95□□□□□ -0.98
RRP40YOL142W EMP47P43555 445 aa8.95□□□□□ -0.98
RRP40YOL142W RTG2P32608 588 aaKnown RBP8.93□□□□□ -0.98
RRP40YOL142W MRT4P33201 236 aaKnown RBP8.93□□□□□ -0.98
RRP40YOL142W YPP1P46951 817 aa8.93□□□□□ -0.98
RRP40YOL142W RIM21P48565 533 aa8.92□□□□□ -0.98
RRP40YOL142W APP1P53933 587 aa8.92□□□□□ -0.98
RRP40YOL142W EMW1P42842 904 aaKnown RBP8.91□□□□□ -0.98
RRP40YOL142W MRX12P47084 519 aa8.91□□□□□ -0.98
RRP40YOL142W ASH1P34233 588 aa8.89□□□□□ -0.99
RRP40YOL142W YPR204WQ08995 1032 aa8.89□□□□□ -0.99
RRP40YOL142W ENO1P00924 437 aaKnown RBP8.88□□□□□ -0.99
RRP40YOL142W AFT1P22149 690 aa8.88□□□□□ -0.99
RRP40YOL142W MRX10Q05648 414 aa8.88□□□□□ -0.99
RRP40YOL142W APL6P46682 809 aa8.87□□□□□ -0.99
RRP40YOL142W HST3P53687 447 aa8.87□□□□□ -0.99
RRP40YOL142W YBL086CP38177 466 aa8.85□□□□□ -0.99
RRP40YOL142W RLF2Q12495 606 aa8.85□□□□□ -0.99
RRP40YOL142W RDS2P19541 446 aaKnown RBP8.84□□□□□ -0.99
RRP40YOL142W ATG20Q07528 640 aa8.84□□□□□ -0.99
RRP40YOL142W MKS1P34072 584 aa8.83□□□□□ -1
RRP40YOL142W ATG3P40344 310 aa8.82□□□□□ -1
RRP40YOL142W MSB3P48566 633 aaPredicted RBP8.82□□□□□ -1
RRP40YOL142W UGA3P26370 528 aa8.81□□□□□ -1
RRP40YOL142W RTT106P40161 455 aa8.81□□□□□ -1
RRP40YOL142W TAF7Q05021 590 aa8.81□□□□□ -1
RRP40YOL142W ENV9Q08651 330 aa8.81□□□□□ -1
RRP40YOL142W SOH1P38633 127 aa8.8□□□□□ -1
RRP40YOL142W BRE2P43132 505 aa8.8□□□□□ -1
RRP40YOL142W FBP26P32604 452 aa8.79□□□□□ -1
RRP40YOL142W UTP13Q05946 817 aaKnown RBP8.79□□□□□ -1
RRP40YOL142W ISR1Q06098 443 aaKnown RBP8.79□□□□□ -1
RRP40YOL142W DFG5Q05031 458 aa8.78□□□□□ -1
RRP40YOL142W HAL5P38970 855 aaKnown RBP8.77□□□□□ -1.01
RRP40YOL142W YJR115WP47152 169 aa8.77□□□□□ -1.01
RRP40YOL142W PEP12P32854 288 aa8.76□□□□□ -1.01
RRP40YOL142W TTI1P36097 1038 aa8.76□□□□□ -1.01
RRP40YOL142W GCR2Q01722 534 aa8.76□□□□□ -1.01
RRP40YOL142W ISU1Q03020 165 aa8.76□□□□□ -1.01
RRP40YOL142W STE6P12866 1290 aa8.74□□□□□ -1.01
RRP40YOL142W SIS2P36024 562 aa8.74□□□□□ -1.01
RRP40YOL142W PTK2P47116 818 aaKnown RBP8.73□□□□□ -1.01
RRP40YOL142W BDS1Q08347 646 aa8.73□□□□□ -1.01
RRP40YOL142W CPS1P27614 576 aa8.71□□□□□ -1.02
RRP40YOL142W SRF1Q12516 437 aa8.71□□□□□ -1.02
RRP40YOL142W ARG82P07250 355 aa8.7□□□□□ -1.02
RRP40YOL142W KTR7P40504 517 aa8.7□□□□□ -1.02
RRP40YOL142W AAD14P42884 376 aa8.7□□□□□ -1.02
RRP40YOL142W SPT2P06843 333 aaPredicted RBP8.69□□□□□ -1.02
RRP40YOL142W HDA3Q06623 655 aa8.69□□□□□ -1.02
RRP40YOL142W MIP1P15801 1254 aa8.68□□□□□ -1.02
RRP40YOL142W UTR2P32623 467 aa8.68□□□□□ -1.02
RRP40YOL142W CBC2Q08920 208 aaKnown RBP RIP-Chip data8.68□□□□□ -1.02not detected
RRP40YOL142W RPP2BP02400 110 aaKnown RBP8.67□□□□□ -1.02
RRP40YOL142W WTM2Q12206 467 aa8.66□□□□□ -1.02
RRP40YOL142W DAT1P13483 248 aaKnown RBP8.65□□□□□ -1.02
RRP40YOL142W SSA4P22202 642 aaKnown RBP8.65□□□□□ -1.02
RRP40YOL142W TGL4P36165 910 aa8.65□□□□□ -1.02
RRP40YOL142W NUP85P46673 744 aa8.65□□□□□ -1.02
RRP40YOL142W AIM9P40053 627 aaKnown RBP8.63□□□□□ -1.03
RRP40YOL142W DLD1P32891 587 aa8.62□□□□□ -1.03
RRP40YOL142W TBS1P38114 1094 aa8.62□□□□□ -1.03
RRP40YOL142W DLD3P39976 496 aaKnown RBP8.62□□□□□ -1.03
RRP40YOL142W SLX8P40072 274 aa8.62□□□□□ -1.03
RRP40YOL142W GAL2P13181 574 aa8.61□□□□□ -1.03
RRP40YOL142W PDI1P17967 522 aaKnown RBP8.61□□□□□ -1.03
RRP40YOL142W PUP1P25043 261 aa8.61□□□□□ -1.03
RRP40YOL142W PHO87P25360 923 aa8.61□□□□□ -1.03
RRP40YOL142W YFL034WP43564 1073 aa8.61□□□□□ -1.03
RRP40YOL142W TSC13Q99190 310 aa8.61□□□□□ -1.03
RRP40YOL142W MET22P32179 357 aa8.6□□□□□ -1.03
RRP40YOL142W ACS2P52910 683 aaKnown RBP8.6□□□□□ -1.03
RRP40YOL142W LSC2P53312 427 aa8.59□□□□□ -1.03
RRP40YOL142W SUB2Q07478 446 aaKnown RBP8.59□□□□□ -1.03
RRP40YOL142W SWI5P08153 709 aa8.58□□□□□ -1.04
RRP40YOL142W YJR098CP47139 656 aa8.58□□□□□ -1.04
RRP40YOL142W ECM23Q02710 187 aa8.58□□□□□ -1.04
RRP40YOL142W HAP4P14064 554 aa8.57□□□□□ -1.04
RRP40YOL142W NTH2P35172 780 aa8.57□□□□□ -1.04
RRP40YOL142W OPT2Q06593 877 aa8.57□□□□□ -1.04
RRP40YOL142W RPS6AP0CX37 236 aaKnown RBP8.56□□□□□ -1.04
RRP40YOL142W RPS6BP0CX38 236 aaPredicted RBP8.56□□□□□ -1.04
RRP40YOL142W UTP7P40055 554 aaKnown RBP8.56□□□□□ -1.04
RRP40YOL142W YDR444WQ04093 687 aa8.56□□□□□ -1.04
RRP40YOL142W YLR346CQ06139 101 aa8.56□□□□□ -1.04
RRP40YOL142W LCB5Q06147 687 aaKnown RBP8.56□□□□□ -1.04
Retrieved 100 of 5,963 RNA–protein pairs in 8.5 ms