RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeastyeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PUB1YNL016W FRK1Q03002 865 aaPredicted RBP5.75□□□□□ -1.49
PUB1YNL016W IOC4Q04213 475 aa5.74□□□□□ -1.49
PUB1YNL016W SNQ2P32568 1501 aaKnown RBP5.74□□□□□ -1.49
PUB1YNL016W SPB4P25808 606 aaPredicted RBP5.71□□□□□ -1.5
PUB1YNL016W STR2P47164 639 aa5.71□□□□□ -1.5
PUB1YNL016W NOP53Q12080 455 aaKnown RBP5.71□□□□□ -1.5
PUB1YNL016W YPR148CQ06523 435 aa5.7□□□□□ -1.5
PUB1YNL016W NOP8Q08287 484 aaPredicted RBP5.7□□□□□ -1.5
PUB1YNL016W TRM3Q07527 1436 aa5.7□□□□□ -1.5
PUB1YNL016W MET10P39692 1035 aa5.69□□□□□ -1.5
PUB1YNL016W ISM1P48526 1002 aa5.68□□□□□ -1.5
PUB1YNL016W YML020WQ03722 664 aa5.68□□□□□ -1.5
PUB1YNL016W PDR12Q02785 1511 aa5.68□□□□□ -1.5
PUB1YNL016W PDR10P51533 1564 aa5.67□□□□□ -1.5
PUB1YNL016W IQG1Q12280 1495 aa5.67□□□□□ -1.5
PUB1YNL016W BDP1P46678 594 aa5.67□□□□□ -1.5
PUB1YNL016W HED1Q03937 162 aa5.66□□□□□ -1.5
PUB1YNL016W GDB1Q06625 1536 aa5.65□□□□□ -1.5
PUB1YNL016W KIN1P13185 1064 aa5.65□□□□□ -1.51
PUB1YNL016W SPT16P32558 1035 aaKnown RBP5.64□□□□□ -1.51
PUB1YNL016W DSF2P38213 736 aa5.64□□□□□ -1.51
PUB1YNL016W RRD1P40454 393 aaKnown RBP5.64□□□□□ -1.51
PUB1YNL016W VPS70P47161 811 aa5.64□□□□□ -1.51
PUB1YNL016W HGH1P48362 394 aaKnown RBP5.64□□□□□ -1.51
PUB1YNL016W YRR1Q12172 810 aa5.64□□□□□ -1.51
PUB1YNL016W TRK2P28584 889 aa5.63□□□□□ -1.51
PUB1YNL016W ASH1P34233 588 aa5.63□□□□□ -1.51
PUB1YNL016W YNR021WP53723 404 aaKnown RBP5.63□□□□□ -1.51
PUB1YNL016W PDR15Q04182 1529 aaKnown RBP5.63□□□□□ -1.51
PUB1YNL016W STH1P32597 1359 aa5.62□□□□□ -1.51
PUB1YNL016W NUP157P40064 1391 aaKnown RBP5.62□□□□□ -1.51
PUB1YNL016W SET1P38827 1080 aaKnown RBP5.62□□□□□ -1.51
PUB1YNL016W DNF3Q12674 1656 aa5.62□□□□□ -1.51
PUB1YNL016W ARO1P08566 1588 aaKnown RBP5.61□□□□□ -1.51
PUB1YNL016W CAF120P53836 1060 aa5.61□□□□□ -1.51
PUB1YNL016W YTA7P40340 1379 aa5.61□□□□□ -1.51
PUB1YNL016W CHC1P22137 1653 aaKnown RBP5.6□□□□□ -1.51
PUB1YNL016W MLP2P40457 1679 aa5.6□□□□□ -1.51
PUB1YNL016W BUD3P25558 1636 aa5.6□□□□□ -1.51
PUB1YNL016W RPP1BP10622 106 aaKnown RBP5.6□□□□□ -1.51
PUB1YNL016W RTT106P40161 455 aa5.6□□□□□ -1.51
PUB1YNL016W NUD1P32336 851 aa5.58□□□□□ -1.52
PUB1YNL016W YLR326WQ06170 240 aaKnown RBP5.58□□□□□ -1.52
PUB1YNL016W MET32Q12041 191 aa5.58□□□□□ -1.52
PUB1YNL016W AIM7Q12156 149 aa5.58□□□□□ -1.52
PUB1YNL016W TY1A-DR4O74302 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-HP0C2I4 478 aaKnown RBP5.57□□□□□ -1.52
PUB1YNL016W TY1A-AP0CX57 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-PR1P0CX58 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-ORP0CX59 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-PR2P0CX60 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-DR5P0CX65 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-ER2P0CX66 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-GR3P0CX67 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-LR1P0CX68 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-MR2P0CX69 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-JR2P47099 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-DR1Q03856 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-ML1Q04706 440 aaKnown RBP5.57□□□□□ -1.52
PUB1YNL016W TY1A-BRQ12217 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-NL2Q12470 440 aa5.57□□□□□ -1.52
PUB1YNL016W TY1A-GR2Q12485 440 aa5.57□□□□□ -1.52
PUB1YNL016W AFT1P22149 690 aa5.56□□□□□ -1.52
PUB1YNL016W PCS60P38137 543 aaKnown RBP RIP-Chip data5.56□□□□□ -1.52not detected
PUB1YNL016W SLX8P40072 274 aa5.56□□□□□ -1.52
PUB1YNL016W SSA1P10591 642 aaKnown RBP5.55□□□□□ -1.52
PUB1YNL016W GEF1P37020 779 aa5.55□□□□□ -1.52
PUB1YNL016W SEC2P17065 759 aa5.55□□□□□ -1.52
PUB1YNL016W GCD11P32481 527 aaKnown RBP5.55□□□□□ -1.52
PUB1YNL016W YGR035CP53222 116 aa5.55□□□□□ -1.52
PUB1YNL016W HST3P53687 447 aa5.55□□□□□ -1.52
PUB1YNL016W PBS2P08018 668 aa5.54□□□□□ -1.52
PUB1YNL016W UBP14P38237 781 aaKnown RBP5.54□□□□□ -1.52
PUB1YNL016W ACO2P39533 789 aa5.54□□□□□ -1.52
PUB1YNL016W PEX21P50091 288 aa5.54□□□□□ -1.52
PUB1YNL016W NRD1P53617 575 aaKnown RBP RIP-Chip data5.54□□□□□ -1.52not detected
PUB1YNL016W GLC3P32775 704 aa5.53□□□□□ -1.52
PUB1YNL016W NPL4P33755 580 aa5.53□□□□□ -1.52
PUB1YNL016W GUA1P38625 525 aaKnown RBP5.52□□□□□ -1.53
PUB1YNL016W LSB3P43603 459 aaKnown RBP5.52□□□□□ -1.53
PUB1YNL016W RAD54P32863 898 aa5.51□□□□□ -1.53
PUB1YNL016W VHR2P40041 505 aa5.51□□□□□ -1.53
PUB1YNL016W RRN7P40992 514 aa5.51□□□□□ -1.53
PUB1YNL016W YJR115WP47152 169 aa5.51□□□□□ -1.53
PUB1YNL016W TY3B-GQ99315 1547 aa5.5□□□□□ -1.53
PUB1YNL016W NOP7P53261 605 aaKnown RBP5.5□□□□□ -1.53
PUB1YNL016W HPC2Q01448 625 aa5.5□□□□□ -1.53
PUB1YNL016W SUB2Q07478 446 aaKnown RBP5.5□□□□□ -1.53
PUB1YNL016W YAP3P38749 330 aa5.49□□□□□ -1.53
PUB1YNL016W MRX12P47084 519 aa5.49□□□□□ -1.53
PUB1YNL016W MAM3Q12296 706 aa5.49□□□□□ -1.53
PUB1YNL016W MAK10Q02197 733 aa5.47□□□□□ -1.53
PUB1YNL016W TUM1Q08686 304 aaKnown RBP5.47□□□□□ -1.53
PUB1YNL016W MAK21Q12176 1025 aaKnown RBP5.47□□□□□ -1.53
PUB1YNL016W USO1P25386 1790 aa5.46□□□□□ -1.54
PUB1YNL016W HPF1Q05164 967 aa5.46□□□□□ -1.54
PUB1YNL016W BNR1P40450 1375 aa5.46□□□□□ -1.54
PUB1YNL016W YSP2Q06681 1438 aa5.46□□□□□ -1.54
PUB1YNL016W SEC7P11075 2009 aaKnown RBP5.45□□□□□ -1.54
PUB1YNL016W ICP55P40051 511 aa5.45□□□□□ -1.54
Retrieved 100 of 5,963 RNA–protein pairs in 7.9 ms