RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	YNL050C	P53952	270 aa		19.88	■□□□□ 0.77
CCC1	YLR220W	THI22	Q06490	572 aa		19.87	■□□□□ 0.77
CCC1	YLR220W	ATG13	Q06628	738 aa		19.87	■□□□□ 0.77
CCC1	YLR220W	UBP1	P25037	809 aa		19.86	■□□□□ 0.77
CCC1	YLR220W	PRP40	P33203	583 aa	Known RBP	19.85	■□□□□ 0.77
CCC1	YLR220W	YJL181W	P46987	611 aa		19.84	■□□□□ 0.77
CCC1	YLR220W	PRI1	P10363	409 aa		19.79	■□□□□ 0.76
CCC1	YLR220W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	19.79	■□□□□ 0.76	not detected
CCC1	YLR220W	VPS27	P40343	622 aa	Known RBP	19.79	■□□□□ 0.76
CCC1	YLR220W	KCC4	P25389	1037 aa		19.78	■□□□□ 0.76
CCC1	YLR220W	HEF3	P53978	1044 aa	Known RBP	19.77	■□□□□ 0.76
CCC1	YLR220W	UGA3	P26370	528 aa		19.75	■□□□□ 0.75
CCC1	YLR220W	PRS1	P32895	427 aa	Known RBP	19.75	■□□□□ 0.75
CCC1	YLR220W	MAM1	P40065	302 aa		19.75	■□□□□ 0.75
CCC1	YLR220W	SAP155	P43612	1002 aa		19.75	■□□□□ 0.75
CCC1	YLR220W	YBP2	P53169	641 aa		19.75	■□□□□ 0.75
CCC1	YLR220W	RTT109	Q07794	436 aa		19.75	■□□□□ 0.75
CCC1	YLR220W	GRX1	P25373	110 aa	Known RBP	19.74	■□□□□ 0.75
CCC1	YLR220W	RIM15	P43565	1770 aa		19.73	■□□□□ 0.75
CCC1	YLR220W	LYS4	P49367	693 aa	Predicted RBP	19.73	■□□□□ 0.75
CCC1	YLR220W	ZDS1	P50111	915 aa	Known RBP	19.73	■□□□□ 0.75
CCC1	YLR220W	CDC45	Q08032	650 aa		19.72	■□□□□ 0.75
CCC1	YLR220W	SUI2	P20459	304 aa	Known RBP	19.71	■□□□□ 0.75
CCC1	YLR220W	MSB4	Q12317	492 aa		19.71	■□□□□ 0.75
CCC1	YLR220W	TPD3	P31383	635 aa		19.7	■□□□□ 0.74
CCC1	YLR220W	GTT3	P39996	337 aa		19.7	■□□□□ 0.74
CCC1	YLR220W	NSE3	Q05541	303 aa		19.69	■□□□□ 0.74
CCC1	YLR220W	TUM1	Q08686	304 aa	Known RBP	19.69	■□□□□ 0.74
CCC1	YLR220W	GYP7	P48365	746 aa		19.67	■□□□□ 0.74
CCC1	YLR220W	LYS2	P07702	1392 aa		19.66	■□□□□ 0.74
CCC1	YLR220W	RAD4	P14736	754 aa		19.65	■□□□□ 0.74
CCC1	YLR220W	RRT14	P40470	206 aa		19.64	■□□□□ 0.73
CCC1	YLR220W	CTH1	P47976	325 aa		19.64	■□□□□ 0.73
CCC1	YLR220W	RMT2	Q03305	412 aa		19.64	■□□□□ 0.73
CCC1	YLR220W	ALE1	Q08548	619 aa		19.63	■□□□□ 0.73
CCC1	YLR220W	BMS1	Q08965	1183 aa	Known RBP	19.63	■□□□□ 0.73
CCC1	YLR220W	YBL086C	P38177	466 aa		19.61	■□□□□ 0.73
CCC1	YLR220W	YRB30	P53107	440 aa	Predicted RBP	19.61	■□□□□ 0.73
CCC1	YLR220W	GRE2	Q12068	342 aa	Known RBP	19.61	■□□□□ 0.73
CCC1	YLR220W	RVB2	Q12464	471 aa	Known RBP	19.61	■□□□□ 0.73
CCC1	YLR220W	COQ4	O13525	335 aa		19.6	■□□□□ 0.73
CCC1	YLR220W	YFR016C	P43597	1233 aa	Known RBP	19.6	■□□□□ 0.73
CCC1	YLR220W	ALD2	P47771	506 aa		19.6	■□□□□ 0.73
CCC1	YLR220W	NOP53	Q12080	455 aa	Known RBP	19.58	■□□□□ 0.72
CCC1	YLR220W	BDF1	P35817	686 aa		19.57	■□□□□ 0.72
CCC1	YLR220W	UGA2	P38067	497 aa		19.55	■□□□□ 0.72
CCC1	YLR220W	SSA2	P10592	639 aa	Known RBP	19.54	■□□□□ 0.72
CCC1	YLR220W	MDG1	P53885	366 aa		19.54	■□□□□ 0.72
CCC1	YLR220W	SRT1	Q03175	343 aa		19.53	■□□□□ 0.72
CCC1	YLR220W	PHM7	Q12252	991 aa		19.53	■□□□□ 0.72
CCC1	YLR220W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	19.52	■□□□□ 0.72	not detected
CCC1	YLR220W	YOL057W	Q08225	711 aa		19.52	■□□□□ 0.72
CCC1	YLR220W	YBR287W	P38355	427 aa		19.5	■□□□□ 0.71
CCC1	YLR220W	SSP2	Q08646	371 aa		19.5	■□□□□ 0.71
CCC1	YLR220W	BUG1	Q12191	341 aa		19.5	■□□□□ 0.71
CCC1	YLR220W	UTP22	P53254	1237 aa	Predicted RBP	19.49	■□□□□ 0.71
CCC1	YLR220W	NYV1	Q12255	253 aa		19.49	■□□□□ 0.71
CCC1	YLR220W	RPG1	P38249	964 aa	Known RBP	19.47	■□□□□ 0.71
CCC1	YLR220W	ALD3	P54114	506 aa		19.45	■□□□□ 0.7
CCC1	YLR220W	TEA1	P47988	759 aa		19.44	■□□□□ 0.7
CCC1	YLR220W	MAK21	Q12176	1025 aa	Known RBP	19.44	■□□□□ 0.7
CCC1	YLR220W	ARG8	P18544	423 aa		19.42	■□□□□ 0.7
CCC1	YLR220W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	19.42	■□□□□ 0.7	not detected
CCC1	YLR220W	ZDS2	P54786	942 aa		19.42	■□□□□ 0.7
CCC1	YLR220W	YPR204W	Q08995	1032 aa		19.42	■□□□□ 0.7
CCC1	YLR220W	TOS1	P38288	455 aa		19.41	■□□□□ 0.7
CCC1	YLR220W	YDR306C	Q06640	478 aa		19.41	■□□□□ 0.7
CCC1	YLR220W	DNM1	P54861	757 aa		19.39	■□□□□ 0.69
CCC1	YLR220W	YJR008W	P47085	338 aa		19.38	■□□□□ 0.69
CCC1	YLR220W	YIL092W	P40497	633 aa		19.37	■□□□□ 0.69
CCC1	YLR220W	DCD1	P06773	312 aa		19.36	■□□□□ 0.69
CCC1	YLR220W	APL2	P36000	726 aa	Predicted RBP	19.35	■□□□□ 0.69
CCC1	YLR220W	UTP10	P42945	1769 aa	Known RBP	19.34	■□□□□ 0.69
CCC1	YLR220W	SER1	P33330	395 aa	Known RBP	19.34	■□□□□ 0.69
CCC1	YLR220W	CST6	P40535	587 aa		19.33	■□□□□ 0.68
CCC1	YLR220W	YPP1	P46951	817 aa		19.32	■□□□□ 0.68
CCC1	YLR220W	YGL082W	P53155	381 aa		19.32	■□□□□ 0.68
CCC1	YLR220W	SWI1	P09547	1314 aa		19.31	■□□□□ 0.68
CCC1	YLR220W	MRP7	P12687	371 aa		19.31	■□□□□ 0.68
CCC1	YLR220W	VPS64	Q03944	604 aa		19.31	■□□□□ 0.68
CCC1	YLR220W	YLR271W	Q06152	274 aa		19.31	■□□□□ 0.68
CCC1	YLR220W	RAD2	P07276	1031 aa		19.3	■□□□□ 0.68
CCC1	YLR220W	DAL5	P15365	543 aa		19.28	■□□□□ 0.68
CCC1	YLR220W	LPD1	P09624	499 aa	Known RBP	19.26	■□□□□ 0.67
CCC1	YLR220W	RIX7	Q07844	837 aa	Known RBP	19.26	■□□□□ 0.67
CCC1	YLR220W	RPS19A	P07280	144 aa	Known RBP	19.25	■□□□□ 0.67
CCC1	YLR220W	RPS19B	P07281	144 aa	Predicted RBP	19.25	■□□□□ 0.67
CCC1	YLR220W	HPC2	Q01448	625 aa		19.25	■□□□□ 0.67
CCC1	YLR220W	SET1	P38827	1080 aa	Known RBP	19.24	■□□□□ 0.67
CCC1	YLR220W	YGR122W	P53272	402 aa		19.24	■□□□□ 0.67
CCC1	YLR220W	RAT1	Q02792	1006 aa	Known RBP	19.24	■□□□□ 0.67
CCC1	YLR220W	CSI1	Q04368	295 aa		19.24	■□□□□ 0.67
CCC1	YLR220W	NUP133	P36161	1157 aa		19.23	■□□□□ 0.67
CCC1	YLR220W	FUN12	P39730	1002 aa	Known RBP	19.23	■□□□□ 0.67
CCC1	YLR220W	RAD24	P32641	659 aa		19.22	■□□□□ 0.67
CCC1	YLR220W	CTI6	Q08923	506 aa		19.22	■□□□□ 0.67
CCC1	YLR220W	SSK22	P25390	1331 aa	Predicted RBP	19.22	■□□□□ 0.67
CCC1	YLR220W	NOP8	Q08287	484 aa	Predicted RBP	19.2	■□□□□ 0.66
CCC1	YLR220W	DIB1	Q06819	143 aa	Predicted RBP	19.19	■□□□□ 0.66
CCC1	YLR220W	HAT1	Q12341	374 aa		19.19	■□□□□ 0.66

Retrieved 100 of 5,963 RNA–protein pairs in 38.9 ms