RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	RTT109	Q07794	436 aa		13.66	□□□□□ -0.22
VPS60	YDR486C	NUP145	P49687	1317 aa		13.65	□□□□□ -0.22
VPS60	YDR486C	COB	P00163	385 aa		13.65	□□□□□ -0.22
VPS60	YDR486C	TPD3	P31383	635 aa		13.65	□□□□□ -0.22
VPS60	YDR486C	RVB2	Q12464	471 aa	Known RBP	13.64	□□□□□ -0.23
VPS60	YDR486C	OSM1	P21375	501 aa	Known RBP	13.63	□□□□□ -0.23
VPS60	YDR486C	YKR075C	P36155	307 aa		13.61	□□□□□ -0.23
VPS60	YDR486C	RPN11	P43588	306 aa	Known RBP	13.61	□□□□□ -0.23
VPS60	YDR486C	ATG13	Q06628	738 aa		13.61	□□□□□ -0.23
VPS60	YDR486C	ZDS1	P50111	915 aa	Known RBP	13.6	□□□□□ -0.23
VPS60	YDR486C	KCC4	P25389	1037 aa		13.59	□□□□□ -0.23
VPS60	YDR486C	MAM1	P40065	302 aa		13.57	□□□□□ -0.24
VPS60	YDR486C	RRT14	P40470	206 aa		13.57	□□□□□ -0.24
VPS60	YDR486C	LAM6	Q08001	693 aa		13.57	□□□□□ -0.24
VPS60	YDR486C	UGA3	P26370	528 aa		13.56	□□□□□ -0.24
VPS60	YDR486C	GYP7	P48365	746 aa		13.56	□□□□□ -0.24
VPS60	YDR486C	BUD31	P25337	157 aa	Predicted RBP	13.54	□□□□□ -0.24
VPS60	YDR486C	YRB30	P53107	440 aa	Predicted RBP	13.54	□□□□□ -0.24
VPS60	YDR486C	YBP2	P53169	641 aa		13.54	□□□□□ -0.24
VPS60	YDR486C	NSE3	Q05541	303 aa		13.54	□□□□□ -0.24
VPS60	YDR486C	PRP40	P33203	583 aa	Known RBP	13.53	□□□□□ -0.24
VPS60	YDR486C	NPR2	P39923	615 aa		13.53	□□□□□ -0.24
VPS60	YDR486C	YJL181W	P46987	611 aa		13.53	□□□□□ -0.24
VPS60	YDR486C	ALE1	Q08548	619 aa		13.53	□□□□□ -0.24
VPS60	YDR486C	BMS1	Q08965	1183 aa	Known RBP	13.53	□□□□□ -0.24
VPS60	YDR486C	COQ4	O13525	335 aa		13.52	□□□□□ -0.25
VPS60	YDR486C	YBR287W	P38355	427 aa		13.52	□□□□□ -0.25
VPS60	YDR486C	EDE1	P34216	1381 aa		13.52	□□□□□ -0.25
VPS60	YDR486C	FUN12	P39730	1002 aa	Known RBP	13.51	□□□□□ -0.25
VPS60	YDR486C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	13.51	□□□□□ -0.25	not detected
VPS60	YDR486C	RIM15	P43565	1770 aa		13.5	□□□□□ -0.25
VPS60	YDR486C	UBP1	P25037	809 aa		13.49	□□□□□ -0.25
VPS60	YDR486C	SRT1	Q03175	343 aa		13.49	□□□□□ -0.25
VPS60	YDR486C	LYS2	P07702	1392 aa		13.48	□□□□□ -0.25
VPS60	YDR486C	GRX1	P25373	110 aa	Known RBP	13.48	□□□□□ -0.25
VPS60	YDR486C	RMT2	Q03305	412 aa		13.48	□□□□□ -0.25
VPS60	YDR486C	TUM1	Q08686	304 aa	Known RBP	13.48	□□□□□ -0.25
VPS60	YDR486C	RAD4	P14736	754 aa		13.44	□□□□□ -0.26
VPS60	YDR486C	MSB4	Q12317	492 aa		13.44	□□□□□ -0.26
VPS60	YDR486C	YIL092W	P40497	633 aa		13.43	□□□□□ -0.26
VPS60	YDR486C	LYS4	P49367	693 aa	Predicted RBP	13.43	□□□□□ -0.26
VPS60	YDR486C	YOL057W	Q08225	711 aa		13.43	□□□□□ -0.26
VPS60	YDR486C	NOP53	Q12080	455 aa	Known RBP	13.43	□□□□□ -0.26
VPS60	YDR486C	MAK21	Q12176	1025 aa	Known RBP	13.43	□□□□□ -0.26
VPS60	YDR486C	DAL5	P15365	543 aa		13.41	□□□□□ -0.26
VPS60	YDR486C	RAD2	P07276	1031 aa		13.4	□□□□□ -0.26
VPS60	YDR486C	YFR016C	P43597	1233 aa	Known RBP	13.4	□□□□□ -0.26
VPS60	YDR486C	ZDS2	P54786	942 aa		13.4	□□□□□ -0.26
VPS60	YDR486C	GRE2	Q12068	342 aa	Known RBP	13.39	□□□□□ -0.27
VPS60	YDR486C	PRI1	P10363	409 aa		13.37	□□□□□ -0.27
VPS60	YDR486C	SSP2	Q08646	371 aa		13.37	□□□□□ -0.27
VPS60	YDR486C	CTH1	P47976	325 aa		13.35	□□□□□ -0.27
VPS60	YDR486C	MDG1	P53885	366 aa		13.35	□□□□□ -0.27
VPS60	YDR486C	YDR306C	Q06640	478 aa		13.35	□□□□□ -0.27
VPS60	YDR486C	PHM7	Q12252	991 aa		13.35	□□□□□ -0.27
VPS60	YDR486C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	13.34	□□□□□ -0.27	not detected
VPS60	YDR486C	YPP1	P46951	817 aa		13.34	□□□□□ -0.27
VPS60	YDR486C	TEA1	P47988	759 aa		13.34	□□□□□ -0.27
VPS60	YDR486C	MRP7	P12687	371 aa		13.33	□□□□□ -0.28
VPS60	YDR486C	APL2	P36000	726 aa	Predicted RBP	13.32	□□□□□ -0.28
VPS60	YDR486C	YBL086C	P38177	466 aa		13.32	□□□□□ -0.28
VPS60	YDR486C	YGR122W	P53272	402 aa		13.32	□□□□□ -0.28
VPS60	YDR486C	DNM1	P54861	757 aa		13.32	□□□□□ -0.28
VPS60	YDR486C	VPS64	Q03944	604 aa		13.32	□□□□□ -0.28
VPS60	YDR486C	NYV1	Q12255	253 aa		13.32	□□□□□ -0.28
VPS60	YDR486C	ARG8	P18544	423 aa		13.31	□□□□□ -0.28
VPS60	YDR486C	CSI1	Q04368	295 aa		13.31	□□□□□ -0.28
VPS60	YDR486C	YPR204W	Q08995	1032 aa		13.31	□□□□□ -0.28
VPS60	YDR486C	BUG1	Q12191	341 aa		13.31	□□□□□ -0.28
VPS60	YDR486C	RAD24	P32641	659 aa		13.3	□□□□□ -0.28
VPS60	YDR486C	BDF1	P35817	686 aa		13.3	□□□□□ -0.28
VPS60	YDR486C	CST6	P40535	587 aa		13.3	□□□□□ -0.28
VPS60	YDR486C	ALD2	P47771	506 aa		13.3	□□□□□ -0.28
VPS60	YDR486C	SWI1	P09547	1314 aa		13.3	□□□□□ -0.28
VPS60	YDR486C	TRP5	P00931	707 aa	Known RBP	13.29	□□□□□ -0.28
VPS60	YDR486C	DCD1	P06773	312 aa		13.29	□□□□□ -0.28
VPS60	YDR486C	GTT3	P39996	337 aa		13.29	□□□□□ -0.28
VPS60	YDR486C	SER1	P33330	395 aa	Known RBP	13.28	□□□□□ -0.28
VPS60	YDR486C	NUP133	P36161	1157 aa		13.28	□□□□□ -0.28
VPS60	YDR486C	YGL082W	P53155	381 aa		13.28	□□□□□ -0.28
VPS60	YDR486C	RPS19A	P07280	144 aa	Known RBP	13.27	□□□□□ -0.29
VPS60	YDR486C	RPS19B	P07281	144 aa	Predicted RBP	13.27	□□□□□ -0.29
VPS60	YDR486C	SSA2	P10592	639 aa	Known RBP	13.27	□□□□□ -0.29
VPS60	YDR486C	RPG1	P38249	964 aa	Known RBP	13.27	□□□□□ -0.29
VPS60	YDR486C	POL32	P47110	350 aa		13.27	□□□□□ -0.29
VPS60	YDR486C	NOP8	Q08287	484 aa	Predicted RBP	13.27	□□□□□ -0.29
VPS60	YDR486C	SWC3	P31376	625 aa		13.26	□□□□□ -0.29
VPS60	YDR486C	YJR008W	P47085	338 aa		13.26	□□□□□ -0.29
VPS60	YDR486C	UTP10	P42945	1769 aa	Known RBP	13.25	□□□□□ -0.29
VPS60	YDR486C	UTP22	P53254	1237 aa	Predicted RBP	13.25	□□□□□ -0.29
VPS60	YDR486C	YLR271W	Q06152	274 aa		13.25	□□□□□ -0.29
VPS60	YDR486C	UGA2	P38067	497 aa		13.24	□□□□□ -0.29
VPS60	YDR486C	PUF6	Q04373	656 aa	Known RBP	13.24	□□□□□ -0.29
VPS60	YDR486C	TFA1	P36100	482 aa		13.23	□□□□□ -0.29
VPS60	YDR486C	FPR3	P38911	411 aa	Known RBP	13.23	□□□□□ -0.29
VPS60	YDR486C	ALD3	P54114	506 aa		13.23	□□□□□ -0.29
VPS60	YDR486C	ILV3	P39522	585 aa	Known RBP	13.22	□□□□□ -0.29
VPS60	YDR486C	BOI2	P39969	1040 aa		13.22	□□□□□ -0.29
VPS60	YDR486C	YNG2	P38806	282 aa	Known RBP	13.21	□□□□□ -0.29
VPS60	YDR486C	LPD1	P09624	499 aa	Known RBP	13.2	□□□□□ -0.3

Retrieved 100 of 5,963 RNA–protein pairs in 285.3 ms