RNA–Protein interactions for RNA: YCL028W

RNQ1, Transcript of [PIN(+)] prion, yeast

Gene RNQ1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RNQ1	YCL028W	YNL050C	P53952	270 aa		14.15	□□□□□ -0.14
RNQ1	YCL028W	FRK1	Q03002	865 aa	Predicted RBP	14.15	□□□□□ -0.14
RNQ1	YCL028W	INP54	Q08227	384 aa	Known RBP	14.15	□□□□□ -0.14
RNQ1	YCL028W	RPL17A	P05740	184 aa	Known RBP	14.14	□□□□□ -0.15
RNQ1	YCL028W	GLN1	P32288	370 aa	Known RBP	14.14	□□□□□ -0.15
RNQ1	YCL028W	RPL17B	P46990	184 aa	Known RBP	14.14	□□□□□ -0.15
RNQ1	YCL028W	FOX2	Q02207	900 aa	Known RBP	14.14	□□□□□ -0.15
RNQ1	YCL028W	YMR074C	Q04773	145 aa		14.13	□□□□□ -0.15
RNQ1	YCL028W	ATG13	Q06628	738 aa		14.13	□□□□□ -0.15
RNQ1	YCL028W	RTT109	Q07794	436 aa		14.13	□□□□□ -0.15
RNQ1	YCL028W	RVB2	Q12464	471 aa	Known RBP	14.13	□□□□□ -0.15
RNQ1	YCL028W	YRF1-3	P0CX14	1859 aa		14.12	□□□□□ -0.15
RNQ1	YCL028W	YRF1-7	P0CX15	1859 aa		14.12	□□□□□ -0.15
RNQ1	YCL028W	YRF1-6	P53819	1859 aa		14.12	□□□□□ -0.15
RNQ1	YCL028W	COB	P00163	385 aa		14.12	□□□□□ -0.15
RNQ1	YCL028W	NUP145	P49687	1317 aa		14.12	□□□□□ -0.15
RNQ1	YCL028W	ZDS1	P50111	915 aa	Known RBP	14.11	□□□□□ -0.15
RNQ1	YCL028W	HEF3	P53978	1044 aa	Known RBP	14.11	□□□□□ -0.15
RNQ1	YCL028W	OSM1	P21375	501 aa	Known RBP	14.1	□□□□□ -0.15
RNQ1	YCL028W	KCC4	P25389	1037 aa		14.08	□□□□□ -0.16
RNQ1	YCL028W	MAM1	P40065	302 aa		14.08	□□□□□ -0.16
RNQ1	YCL028W	LAM6	Q08001	693 aa		14.08	□□□□□ -0.16
RNQ1	YCL028W	RPN11	P43588	306 aa	Known RBP	14.07	□□□□□ -0.16
RNQ1	YCL028W	RRT14	P40470	206 aa		14.06	□□□□□ -0.16
RNQ1	YCL028W	YRB30	P53107	440 aa	Predicted RBP	14.06	□□□□□ -0.16
RNQ1	YCL028W	UGA3	P26370	528 aa		14.05	□□□□□ -0.16
RNQ1	YCL028W	YKR075C	P36155	307 aa		14.05	□□□□□ -0.16
RNQ1	YCL028W	YJL181W	P46987	611 aa		14.05	□□□□□ -0.16
RNQ1	YCL028W	GYP7	P48365	746 aa		14.05	□□□□□ -0.16
RNQ1	YCL028W	NSE3	Q05541	303 aa		14.05	□□□□□ -0.16
RNQ1	YCL028W	PRP40	P33203	583 aa	Known RBP	14.04	□□□□□ -0.16
RNQ1	YCL028W	YBP2	P53169	641 aa		14.04	□□□□□ -0.16
RNQ1	YCL028W	YBR287W	P38355	427 aa		14.03	□□□□□ -0.16
RNQ1	YCL028W	FUN12	P39730	1002 aa	Known RBP	14.02	□□□□□ -0.17
RNQ1	YCL028W	BMS1	Q08965	1183 aa	Known RBP	14.02	□□□□□ -0.17
RNQ1	YCL028W	ALE1	Q08548	619 aa		14.01	□□□□□ -0.17
RNQ1	YCL028W	UBP1	P25037	809 aa		14	□□□□□ -0.17
RNQ1	YCL028W	COQ4	O13525	335 aa		13.99	□□□□□ -0.17
RNQ1	YCL028W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	13.99	□□□□□ -0.17	not detected
RNQ1	YCL028W	BUD31	P25337	157 aa	Predicted RBP	13.98	□□□□□ -0.17
RNQ1	YCL028W	GRX1	P25373	110 aa	Known RBP	13.97	□□□□□ -0.17
RNQ1	YCL028W	RMT2	Q03305	412 aa		13.97	□□□□□ -0.17
RNQ1	YCL028W	HAA1	Q12753	694 aa	Known RBP	13.97	□□□□□ -0.17
RNQ1	YCL028W	EDE1	P34216	1381 aa		13.96	□□□□□ -0.17
RNQ1	YCL028W	NPR2	P39923	615 aa		13.96	□□□□□ -0.17
RNQ1	YCL028W	SRT1	Q03175	343 aa		13.96	□□□□□ -0.17
RNQ1	YCL028W	MAK21	Q12176	1025 aa	Known RBP	13.96	□□□□□ -0.17
RNQ1	YCL028W	RAD2	P07276	1031 aa		13.93	□□□□□ -0.18
RNQ1	YCL028W	RAD4	P14736	754 aa		13.93	□□□□□ -0.18
RNQ1	YCL028W	TUM1	Q08686	304 aa	Known RBP	13.93	□□□□□ -0.18
RNQ1	YCL028W	LYS2	P07702	1392 aa		13.93	□□□□□ -0.18
RNQ1	YCL028W	DAL5	P15365	543 aa		13.92	□□□□□ -0.18
RNQ1	YCL028W	YFR016C	P43597	1233 aa	Known RBP	13.92	□□□□□ -0.18
RNQ1	YCL028W	NOP53	Q12080	455 aa	Known RBP	13.92	□□□□□ -0.18
RNQ1	YCL028W	MSB4	Q12317	492 aa		13.92	□□□□□ -0.18
RNQ1	YCL028W	YIL092W	P40497	633 aa		13.9	□□□□□ -0.18
RNQ1	YCL028W	YOL057W	Q08225	711 aa		13.9	□□□□□ -0.18
RNQ1	YCL028W	LYS4	P49367	693 aa	Predicted RBP	13.88	□□□□□ -0.19
RNQ1	YCL028W	YCK3	P39962	524 aa		13.87	□□□□□ -0.19
RNQ1	YCL028W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	13.87	□□□□□ -0.19	not detected
RNQ1	YCL028W	ZDS2	P54786	942 aa		13.86	□□□□□ -0.19
RNQ1	YCL028W	SSP2	Q08646	371 aa		13.86	□□□□□ -0.19
RNQ1	YCL028W	GRE2	Q12068	342 aa	Known RBP	13.86	□□□□□ -0.19
RNQ1	YCL028W	MDG1	P53885	366 aa		13.85	□□□□□ -0.19
RNQ1	YCL028W	TFA1	P36100	482 aa		13.84	□□□□□ -0.19
RNQ1	YCL028W	RIM15	P43565	1770 aa		13.83	□□□□□ -0.19
RNQ1	YCL028W	YPP1	P46951	817 aa		13.83	□□□□□ -0.2
RNQ1	YCL028W	VPS64	Q03944	604 aa		13.83	□□□□□ -0.2
RNQ1	YCL028W	NOP8	Q08287	484 aa	Predicted RBP	13.83	□□□□□ -0.2
RNQ1	YCL028W	MRP7	P12687	371 aa		13.82	□□□□□ -0.2
RNQ1	YCL028W	PHM7	Q12252	991 aa		13.82	□□□□□ -0.2
RNQ1	YCL028W	FPR3	P38911	411 aa	Known RBP	13.81	□□□□□ -0.2
RNQ1	YCL028W	TEA1	P47988	759 aa		13.81	□□□□□ -0.2
RNQ1	YCL028W	APL2	P36000	726 aa	Predicted RBP	13.8	□□□□□ -0.2
RNQ1	YCL028W	DNM1	P54861	757 aa		13.8	□□□□□ -0.2
RNQ1	YCL028W	CSI1	Q04368	295 aa		13.8	□□□□□ -0.2
RNQ1	YCL028W	BUG1	Q12191	341 aa		13.8	□□□□□ -0.2
RNQ1	YCL028W	MRPL32	P25348	183 aa		13.79	□□□□□ -0.2
RNQ1	YCL028W	ALD2	P47771	506 aa		13.79	□□□□□ -0.2
RNQ1	YCL028W	YDR306C	Q06640	478 aa		13.79	□□□□□ -0.2
RNQ1	YCL028W	SER1	P33330	395 aa	Known RBP	13.78	□□□□□ -0.2
RNQ1	YCL028W	CST6	P40535	587 aa		13.78	□□□□□ -0.2
RNQ1	YCL028W	YGR122W	P53272	402 aa		13.78	□□□□□ -0.2
RNQ1	YCL028W	TRP5	P00931	707 aa	Known RBP	13.77	□□□□□ -0.21
RNQ1	YCL028W	RAD24	P32641	659 aa		13.77	□□□□□ -0.21
RNQ1	YCL028W	YBL086C	P38177	466 aa		13.77	□□□□□ -0.21
RNQ1	YCL028W	NYV1	Q12255	253 aa		13.77	□□□□□ -0.21
RNQ1	YCL028W	BDF1	P35817	686 aa		13.76	□□□□□ -0.21
RNQ1	YCL028W	NUP133	P36161	1157 aa		13.76	□□□□□ -0.21
RNQ1	YCL028W	POL32	P47110	350 aa		13.76	□□□□□ -0.21
RNQ1	YCL028W	CTH1	P47976	325 aa		13.76	□□□□□ -0.21
RNQ1	YCL028W	YGL082W	P53155	381 aa		13.76	□□□□□ -0.21
RNQ1	YCL028W	YPR204W	Q08995	1032 aa		13.76	□□□□□ -0.21
RNQ1	YCL028W	SWI1	P09547	1314 aa		13.75	□□□□□ -0.21
RNQ1	YCL028W	ARG8	P18544	423 aa		13.75	□□□□□ -0.21
RNQ1	YCL028W	PUF6	Q04373	656 aa	Known RBP	13.75	□□□□□ -0.21
RNQ1	YCL028W	GTT3	P39996	337 aa		13.74	□□□□□ -0.21
RNQ1	YCL028W	RPS19A	P07280	144 aa	Known RBP	13.73	□□□□□ -0.21
RNQ1	YCL028W	RPS19B	P07281	144 aa	Predicted RBP	13.73	□□□□□ -0.21
RNQ1	YCL028W	SSA2	P10592	639 aa	Known RBP	13.73	□□□□□ -0.21

Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms