RNA–Protein interactions for RNA: NME1

NME1, Transcript of RNA component of RNase MRP, yeast

Gene NME1, Length 340 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NME1	NME1	ENV9	Q08651	330 aa		13.56	□□□□□ -0.24
NME1	NME1	GUT2	P32191	649 aa		13.55	□□□□□ -0.24
NME1	NME1	PEP12	P32854	288 aa		13.55	□□□□□ -0.24
NME1	NME1	RDS2	P19541	446 aa	Known RBP	13.54	□□□□□ -0.24
NME1	NME1	FIG4	P42837	879 aa		13.54	□□□□□ -0.24
NME1	NME1	MRX12	P47084	519 aa		13.54	□□□□□ -0.24
NME1	NME1	STE20	Q03497	939 aa	Known RBP	13.54	□□□□□ -0.24
NME1	NME1	SIS1	P25294	352 aa	Known RBP	13.53	□□□□□ -0.24
NME1	NME1	ATG3	P40344	310 aa		13.52	□□□□□ -0.25
NME1	NME1	YML083C	Q04526	418 aa		13.52	□□□□□ -0.25
NME1	NME1	HXT10	P43581	546 aa		13.51	□□□□□ -0.25
NME1	NME1	FRA1	Q07825	749 aa		13.51	□□□□□ -0.25
NME1	NME1	KTR7	P40504	517 aa		13.5	□□□□□ -0.25
NME1	NME1	GYP1	Q08484	637 aa		13.49	□□□□□ -0.25
NME1	NME1	SAS4	Q04003	481 aa		13.48	□□□□□ -0.25
NME1	NME1	CDC3	P32457	520 aa	Known RBP	13.47	□□□□□ -0.25
NME1	NME1	YPR084W	Q06821	456 aa		13.46	□□□□□ -0.25
NME1	NME1	TPD3	P31383	635 aa		13.45	□□□□□ -0.26
NME1	NME1	ECM23	Q02710	187 aa		13.44	□□□□□ -0.26
NME1	NME1	NOP8	Q08287	484 aa	Predicted RBP	13.44	□□□□□ -0.26
NME1	NME1	RRD1	P40454	393 aa	Known RBP	13.43	□□□□□ -0.26
NME1	NME1	VAC17	P25591	423 aa		13.41	□□□□□ -0.26
NME1	NME1	GAL2	P13181	574 aa		13.4	□□□□□ -0.26
NME1	NME1	UTP13	Q05946	817 aa	Known RBP	13.4	□□□□□ -0.26
NME1	NME1	MOD5	P07884	428 aa		13.37	□□□□□ -0.27
NME1	NME1	SOH1	P38633	127 aa		13.37	□□□□□ -0.27
NME1	NME1	APL6	P46682	809 aa		13.36	□□□□□ -0.27
NME1	NME1	MRF1	P30775	413 aa	Predicted RBP	13.35	□□□□□ -0.27
NME1	NME1	UBX7	P38349	436 aa		13.34	□□□□□ -0.27
NME1	NME1	PHO87	P25360	923 aa		13.32	□□□□□ -0.28
NME1	NME1	SLD2	P34252	453 aa		13.3	□□□□□ -0.28
NME1	NME1	HAP4	P14064	554 aa		13.29	□□□□□ -0.28
NME1	NME1	KIP2	P28743	706 aa		13.28	□□□□□ -0.28
NME1	NME1	YEL077C	Q3E7X8	1277 aa		13.27	□□□□□ -0.29
NME1	NME1	IXR1	P33417	597 aa		13.26	□□□□□ -0.29
NME1	NME1	HAT1	Q12341	374 aa		13.26	□□□□□ -0.29
NME1	NME1	SSF1	P38789	453 aa	Predicted RBP	13.25	□□□□□ -0.29
NME1	NME1	ACS2	P52910	683 aa	Known RBP	13.24	□□□□□ -0.29
NME1	NME1	VRP1	P37370	817 aa		13.23	□□□□□ -0.29
NME1	NME1	ISR1	Q06098	443 aa	Known RBP	13.23	□□□□□ -0.29
NME1	NME1	TSC13	Q99190	310 aa		13.23	□□□□□ -0.29
NME1	NME1	ITT1	Q04638	464 aa		13.22	□□□□□ -0.29
NME1	NME1	ATG20	Q07528	640 aa		13.22	□□□□□ -0.29
NME1	NME1	PUF6	Q04373	656 aa	Known RBP	13.21	□□□□□ -0.29
NME1	NME1	GAS4	Q08271	471 aa		13.21	□□□□□ -0.29
NME1	NME1	YFL034W	P43564	1073 aa		13.2	□□□□□ -0.3
NME1	NME1	BDP1	P46678	594 aa		13.2	□□□□□ -0.3
NME1	NME1	SYH1	Q02875	849 aa	Known RBP	13.2	□□□□□ -0.3
NME1	NME1	PDI1	P17967	522 aa	Known RBP	13.19	□□□□□ -0.3
NME1	NME1	PUS5	Q06244	254 aa		13.19	□□□□□ -0.3
NME1	NME1	HAL5	P38970	855 aa	Known RBP	13.18	□□□□□ -0.3
NME1	NME1	ROM1	P53046	1155 aa		13.18	□□□□□ -0.3
NME1	NME1	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	13.18	□□□□□ -0.3	not detected
NME1	NME1	MIP1	P15801	1254 aa		13.17	□□□□□ -0.3
NME1	NME1	FRK1	Q03002	865 aa	Predicted RBP	13.16	□□□□□ -0.3
NME1	NME1	SDH2	P21801	266 aa		13.14	□□□□□ -0.31
NME1	NME1	AIM9	P40053	627 aa	Known RBP	13.14	□□□□□ -0.31
NME1	NME1	CWC15	Q03772	175 aa	Known RBP	13.14	□□□□□ -0.31
NME1	NME1	EMW1	P42842	904 aa	Known RBP	13.13	□□□□□ -0.31
NME1	NME1	APP1	P53933	587 aa		13.13	□□□□□ -0.31
NME1	NME1	HDA3	Q06623	655 aa		13.13	□□□□□ -0.31
NME1	NME1	VAN1	P23642	535 aa		13.11	□□□□□ -0.31
NME1	NME1	KAR5	Q04746	504 aa		13.11	□□□□□ -0.31
NME1	NME1	CST6	P40535	587 aa		13.1	□□□□□ -0.31
NME1	NME1	TPS3	P38426	1054 aa	Known RBP	13.09	□□□□□ -0.31
NME1	NME1	PUN1	Q06991	263 aa		13.09	□□□□□ -0.31
NME1	NME1	YBL113C	Q7M4S9	792 aa		13.08	□□□□□ -0.32
NME1	NME1	TRS33	Q99394	268 aa		13.08	□□□□□ -0.32
NME1	NME1	PNP1	Q05788	311 aa		13.07	□□□□□ -0.32
NME1	NME1	SRS2	P12954	1174 aa		13.06	□□□□□ -0.32
NME1	NME1	BCK2	P33306	851 aa		13.06	□□□□□ -0.32
NME1	NME1	MKS1	P34072	584 aa		13.05	□□□□□ -0.32
NME1	NME1	NTH2	P35172	780 aa		13.05	□□□□□ -0.32
NME1	NME1	STM1	P39015	273 aa	Known RBP	13.05	□□□□□ -0.32
NME1	NME1	SEN54	Q02825	467 aa	Predicted RBP	13.05	□□□□□ -0.32
NME1	NME1	FBP26	P32604	452 aa		13.04	□□□□□ -0.32
NME1	NME1	ISU1	Q03020	165 aa		13.04	□□□□□ -0.32
NME1	NME1	UTR2	P32623	467 aa		13.03	□□□□□ -0.32
NME1	NME1	ERP5	P38819	212 aa		13.03	□□□□□ -0.32
NME1	NME1	SPT2	P06843	333 aa	Predicted RBP	13.01	□□□□□ -0.33
NME1	NME1	CYT1	P07143	309 aa		13	□□□□□ -0.33
NME1	NME1	RPS6A	P0CX37	236 aa	Known RBP	13	□□□□□ -0.33
NME1	NME1	RPS6B	P0CX38	236 aa	Predicted RBP	13	□□□□□ -0.33
NME1	NME1	HEM3	P28789	327 aa		13	□□□□□ -0.33
NME1	NME1	CWH41	P53008	833 aa		13	□□□□□ -0.33
NME1	NME1	RPP2B	P02400	110 aa	Known RBP	12.99	□□□□□ -0.33
NME1	NME1	FUR4	P05316	633 aa	Known RBP	12.99	□□□□□ -0.33
NME1	NME1	MRT4	P33201	236 aa	Known RBP	12.99	□□□□□ -0.33
NME1	NME1	TBS1	P38114	1094 aa		12.99	□□□□□ -0.33
NME1	NME1	UBP1	P25037	809 aa		12.98	□□□□□ -0.33
NME1	NME1	SWI5	P08153	709 aa		12.97	□□□□□ -0.33
NME1	NME1	DAT1	P13483	248 aa	Known RBP	12.97	□□□□□ -0.33
NME1	NME1	SEC20	P28791	383 aa		12.96	□□□□□ -0.33
NME1	NME1	XDJ1	P39102	459 aa		12.96	□□□□□ -0.33
NME1	NME1	ALD4	P46367	519 aa	Known RBP	12.96	□□□□□ -0.33
NME1	NME1	GRS1	P38088	690 aa	Known RBP	12.95	□□□□□ -0.34
NME1	NME1	BOL3	P39724	118 aa		12.95	□□□□□ -0.34
NME1	NME1	HED1	Q03937	162 aa		12.95	□□□□□ -0.34
NME1	NME1	AMS1	P22855	1083 aa		12.93	□□□□□ -0.34
NME1	NME1	RRN6	P32786	894 aa		12.93	□□□□□ -0.34

Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms