RNA–Protein interactions for RNA: ENST00000638473.1

SCN3A-208, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-208ENST00000638473 SUPT16HQ9Y5B9 1047 aaKnown RBP5.71□□□□□ -1.5
SCN3A-208ENST00000638473 CD109Q6YHK3 1445 aa5.71□□□□□ -1.5
SCN3A-208ENST00000638473 NGDNQ8NEJ9 315 aaKnown RBP5.7□□□□□ -1.5
SCN3A-208ENST00000638473 TERF2IPQ9NYB0 399 aa5.7□□□□□ -1.5
SCN3A-208ENST00000638473 CFAP43Q8NDM7 1665 aa5.7□□□□□ -1.5
SCN3A-208ENST00000638473 RALBP1Q15311 655 aa5.7□□□□□ -1.5
SCN3A-208ENST00000638473 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.7□□□□□ -1.5
SCN3A-208ENST00000638473 ST20-MTHFSA0A0A6YYL1 179 aa5.7□□□□□ -1.5
SCN3A-208ENST00000638473 RAPGEF3O95398 923 aa5.7□□□□□ -1.5
SCN3A-208ENST00000638473 USP47Q96K76 1375 aa5.7□□□□□ -1.5
SCN3A-208ENST00000638473 UPF2Q9HAU5 1272 aaKnown RBP5.7□□□□□ -1.5
SCN3A-208ENST00000638473 CCER2I3L3R5 266 aa5.69□□□□□ -1.5
SCN3A-208ENST00000638473 CCDC141Q6ZP82 1450 aa5.69□□□□□ -1.5
SCN3A-208ENST00000638473 MAP3K1Q13233 1512 aa5.69□□□□□ -1.5
SCN3A-208ENST00000638473 WDR97A6NE52 1622 aa5.69□□□□□ -1.5
SCN3A-208ENST00000638473 EVC2Q86UK5 1308 aa5.69□□□□□ -1.5
SCN3A-208ENST00000638473 MINK1Q8N4C8 1332 aaPredicted RBP5.69□□□□□ -1.5
SCN3A-208ENST00000638473 CSB-PGBD3P0DP91 1061 aa5.69□□□□□ -1.5
SCN3A-208ENST00000638473 RTF1Q92541 710 aaKnown RBP5.69□□□□□ -1.5
SCN3A-208ENST00000638473 FRAT1Q92837 279 aaPredicted RBP5.69□□□□□ -1.5
SCN3A-208ENST00000638473 ADGRL1O94910 1474 aa5.68□□□□□ -1.5
SCN3A-208ENST00000638473 UGGT2Q9NYU1 1516 aa5.68□□□□□ -1.5
SCN3A-208ENST00000638473 AEBP2Q6ZN18 517 aaPredicted RBP5.68□□□□□ -1.5
SCN3A-208ENST00000638473 PANK3Q9H999 370 aa5.68□□□□□ -1.5
SCN3A-208ENST00000638473 TARBP1Q13395 1621 aaKnown RBP5.68□□□□□ -1.5
SCN3A-208ENST00000638473 CEP170Q5SW79 1584 aa5.68□□□□□ -1.5
SCN3A-208ENST00000638473 KIAA1107Q9UPP5 1409 aa5.67□□□□□ -1.5
SCN3A-208ENST00000638473 U2AF1L5P0DN76 240 aaPredicted RBP5.67□□□□□ -1.5
SCN3A-208ENST00000638473 U2AF1Q01081 240 aaKnown RBP eCLIP5.67□□□□□ -1.5
SCN3A-208ENST00000638473 CHD1O14646 1710 aa5.67□□□□□ -1.5
SCN3A-208ENST00000638473 HSP90AA1P07900 732 aaKnown RBP5.67□□□□□ -1.5
SCN3A-208ENST00000638473 CCDC146Q8IYE0 955 aa5.67□□□□□ -1.5
SCN3A-208ENST00000638473 HFM1A2PYH4 1435 aa5.67□□□□□ -1.5
SCN3A-208ENST00000638473 FANCAO15360 1455 aa5.67□□□□□ -1.5
SCN3A-208ENST00000638473 ABCC5O15440 1437 aa5.66□□□□□ -1.5
SCN3A-208ENST00000638473 CCDC9Q9Y3X0 531 aaKnown RBP5.66□□□□□ -1.5
SCN3A-208ENST00000638473 AMPHP49418 695 aa5.66□□□□□ -1.5
SCN3A-208ENST00000638473 NPHP1O15259 732 aa5.66□□□□□ -1.5
SCN3A-208ENST00000638473 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.65□□□□□ -1.5
SCN3A-208ENST00000638473 ATP10BO94823 1461 aa5.65□□□□□ -1.5
SCN3A-208ENST00000638473 ROCK1Q13464 1354 aa5.65□□□□□ -1.5
SCN3A-208ENST00000638473 ERBINQ96RT1 1412 aa5.65□□□□□ -1.5
SCN3A-208ENST00000638473 TMEM132EQ6IEE7 984 aa5.65□□□□□ -1.5
SCN3A-208ENST00000638473 LTV1Q96GA3 475 aaPredicted RBP5.65□□□□□ -1.5
SCN3A-208ENST00000638473 ASXL2Q76L83 1435 aa5.65□□□□□ -1.51
SCN3A-208ENST00000638473 POGZQ7Z3K3 1410 aa5.65□□□□□ -1.51
SCN3A-208ENST00000638473 COG3Q96JB2 828 aa5.64□□□□□ -1.51
SCN3A-208ENST00000638473 NUP153P49790 1475 aaKnown RBP5.64□□□□□ -1.51
SCN3A-208ENST00000638473 CGNL1Q0VF96 1302 aa5.64□□□□□ -1.51
SCN3A-208ENST00000638473 MYBBP1AQ9BQG0 1328 aaKnown RBP5.64□□□□□ -1.51
SCN3A-208ENST00000638473 WDR7Q9Y4E6 1490 aa5.64□□□□□ -1.51
SCN3A-208ENST00000638473 FAM135AQ9P2D6 1515 aa5.64□□□□□ -1.51
SCN3A-208ENST00000638473 AKNAQ7Z591 1439 aa5.64□□□□□ -1.51
SCN3A-208ENST00000638473 CABP2Q9NPB3 220 aa5.63□□□□□ -1.51
SCN3A-208ENST00000638473 PSME1Q06323 249 aa5.63□□□□□ -1.51
SCN3A-208ENST00000638473 CENPJQ9HC77 1338 aaPredicted RBP5.63□□□□□ -1.51
SCN3A-208ENST00000638473 NAIPQ13075 1403 aa5.63□□□□□ -1.51
SCN3A-208ENST00000638473 SYCP2Q9BX26 1530 aa5.63□□□□□ -1.51
SCN3A-208ENST00000638473 TXNDC2Q86VQ3 553 aa5.63□□□□□ -1.51
SCN3A-208ENST00000638473 DENND4BO75064 1496 aaPredicted RBP5.63□□□□□ -1.51
SCN3A-208ENST00000638473 MS4A1P11836 297 aa5.63□□□□□ -1.51
SCN3A-208ENST00000638473 GPATCH8Q9UKJ3 1502 aaKnown RBP5.62□□□□□ -1.51
SCN3A-208ENST00000638473 CALD1Q05682 793 aaKnown RBP5.62□□□□□ -1.51
SCN3A-208ENST00000638473 STAC3Q96MF2 364 aa5.62□□□□□ -1.51
SCN3A-208ENST00000638473 ATF3P18847 181 aa5.62□□□□□ -1.51
SCN3A-208ENST00000638473 EVA1CP58658 441 aa5.62□□□□□ -1.51
SCN3A-208ENST00000638473 OS9Q13438 667 aaPredicted RBP5.62□□□□□ -1.51
SCN3A-208ENST00000638473 CFAP70Q5T0N1 1121 aa5.62□□□□□ -1.51
SCN3A-208ENST00000638473 CASC1Q6TDU7 716 aa5.62□□□□□ -1.51
SCN3A-208ENST00000638473 SAMD9Q5K651 1589 aa5.62□□□□□ -1.51
SCN3A-208ENST00000638473 DISP1Q96F81 1524 aa5.61□□□□□ -1.51
SCN3A-208ENST00000638473 NLRP13Q86W25 1043 aa5.61□□□□□ -1.51
SCN3A-208ENST00000638473 CHMP4BQ9H444 224 aaKnown RBP5.61□□□□□ -1.51
SCN3A-208ENST00000638473 NUP160Q12769 1436 aa5.61□□□□□ -1.51
SCN3A-208ENST00000638473 CCDC7Q96M83 1385 aa5.61□□□□□ -1.51
SCN3A-208ENST00000638473 PPP4R2Q9NY27 417 aa5.61□□□□□ -1.51
SCN3A-208ENST00000638473 ABCC2Q92887 1545 aa5.61□□□□□ -1.51
SCN3A-208ENST00000638473 PLCH2O75038 1416 aa5.61□□□□□ -1.51
SCN3A-208ENST00000638473 TEX14Q8IWB6 1497 aa5.6□□□□□ -1.51
SCN3A-208ENST00000638473 PRAM1Q96QH2 718 aa5.6□□□□□ -1.51
SCN3A-208ENST00000638473 DUOX2Q9NRD8 1548 aa5.6□□□□□ -1.51
SCN3A-208ENST00000638473 THEMISQ8N1K5 641 aaPredicted RBP5.6□□□□□ -1.51
SCN3A-208ENST00000638473 RRP7AQ9Y3A4 280 aaKnown RBP5.6□□□□□ -1.51
SCN3A-208ENST00000638473 KIF7Q2M1P5 1343 aa5.6□□□□□ -1.51
SCN3A-208ENST00000638473 MEX3CQ5U5Q3 659 aaKnown RBP5.6□□□□□ -1.51
SCN3A-208ENST00000638473 NBPF1Q3BBV0 1214 aa5.6□□□□□ -1.51
SCN3A-208ENST00000638473 ZNF330Q9Y3S2 320 aaPredicted RBP5.6□□□□□ -1.51
SCN3A-208ENST00000638473 ADGBQ8N7X0 1667 aa5.6□□□□□ -1.51
SCN3A-208ENST00000638473 CNTLNQ9NXG0 1405 aa5.59□□□□□ -1.51
SCN3A-208ENST00000638473 RCAN3Q9UKA8 241 aa5.59□□□□□ -1.51
SCN3A-208ENST00000638473 MYO5CQ9NQX4 1742 aa5.59□□□□□ -1.51
SCN3A-208ENST00000638473 NUTM2GQ5VZR2 741 aa5.59□□□□□ -1.51
SCN3A-208ENST00000638473 TSPOAP1O95153 1857 aa5.59□□□□□ -1.51
SCN3A-208ENST00000638473 B4GALNT3Q6L9W6 998 aa5.59□□□□□ -1.51
SCN3A-208ENST00000638473 SLC52A1Q9NWF4 448 aa5.59□□□□□ -1.51
SCN3A-208ENST00000638473 GOLGA2Q08379 1002 aa5.59□□□□□ -1.52
SCN3A-208ENST00000638473 CDK19Q9BWU1 502 aa5.59□□□□□ -1.52
SCN3A-208ENST00000638473 RGS3P49796 1198 aa5.59□□□□□ -1.52
SCN3A-208ENST00000638473 LMOD3Q0VAK6 560 aa5.59□□□□□ -1.52
SCN3A-208ENST00000638473 C1orf141Q5JVX7 400 aa5.59□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms