RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, human

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-244	ENST00000636147	ZBTB7C	A1YPR0	619 aa		14.06	□□□□□ -0.16
CLN3-244	ENST00000636147	CENPJ	Q9HC77	1338 aa	Predicted RBP	14.06	□□□□□ -0.16
CLN3-244	ENST00000636147	FANCD2	Q9BXW9	1451 aa		14.06	□□□□□ -0.16
CLN3-244	ENST00000636147	BCAR3	O75815	825 aa		14.05	□□□□□ -0.16
CLN3-244	ENST00000636147	GOLGA6L22	H0YM25	854 aa		14.05	□□□□□ -0.16
CLN3-244	ENST00000636147	PTPN23	Q9H3S7	1636 aa		14.05	□□□□□ -0.16
CLN3-244	ENST00000636147	SLC24A1	O60721	1099 aa		14.05	□□□□□ -0.16
CLN3-244	ENST00000636147	ERCC6	Q03468	1493 aa		14.05	□□□□□ -0.16
CLN3-244	ENST00000636147	FAM43A	Q8N2R8	423 aa		14.03	□□□□□ -0.16
CLN3-244	ENST00000636147	NCAPD3	P42695	1498 aa		14.03	□□□□□ -0.16
CLN3-244	ENST00000636147	U2SURP	O15042	1029 aa	Known RBP	14.02	□□□□□ -0.17
CLN3-244	ENST00000636147	RWDD1	Q9H446	243 aa	Predicted RBP	14.02	□□□□□ -0.17
CLN3-244	ENST00000636147	CC2D2A	Q9P2K1	1620 aa		14.01	□□□□□ -0.17
CLN3-244	ENST00000636147	MAPK8IP3	Q9UPT6	1336 aa		14	□□□□□ -0.17
CLN3-244	ENST00000636147	MORC1	Q86VD1	984 aa		14	□□□□□ -0.17
CLN3-244	ENST00000636147	PMFBP1	Q8TBY8	1022 aa		14	□□□□□ -0.17
CLN3-244	ENST00000636147	CFAP53	Q96M91	514 aa		14	□□□□□ -0.17
CLN3-244	ENST00000636147	ITPRIP	Q8IWB1	547 aa		13.98	□□□□□ -0.17
CLN3-244	ENST00000636147	BIVM-ERCC5	R4GMW8	1640 aa		13.98	□□□□□ -0.17
CLN3-244	ENST00000636147	CGNL1	Q0VF96	1302 aa		13.98	□□□□□ -0.17
CLN3-244	ENST00000636147	WASHC2C	Q9Y4E1	1318 aa		13.98	□□□□□ -0.17
CLN3-244	ENST00000636147	MSN	P26038	577 aa	Known RBP	13.98	□□□□□ -0.17
CLN3-244	ENST00000636147	UBE2Q2	Q8WVN8	375 aa		13.97	□□□□□ -0.17
CLN3-244	ENST00000636147	RNF123	Q5XPI4	1314 aa		13.97	□□□□□ -0.17
CLN3-244	ENST00000636147		E9PSI1	815 aa		13.97	□□□□□ -0.17
CLN3-244	ENST00000636147	PTMA	P06454	111 aa	Known RBP	13.97	□□□□□ -0.17
CLN3-244	ENST00000636147	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.97	□□□□□ -0.17
CLN3-244	ENST00000636147	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.96	□□□□□ -0.17
CLN3-244	ENST00000636147	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.96	□□□□□ -0.17
CLN3-244	ENST00000636147	RPRD2	Q5VT52	1461 aa	Known RBP	13.96	□□□□□ -0.17
CLN3-244	ENST00000636147	CCDC144A	A2RUR9	1427 aa		13.96	□□□□□ -0.17
CLN3-244	ENST00000636147	MIA2	Q96PC5	1412 aa		13.96	□□□□□ -0.17
CLN3-244	ENST00000636147	DHX29	Q7Z478	1369 aa	Known RBP	13.96	□□□□□ -0.18
CLN3-244	ENST00000636147	PPP2R1A	P30153	589 aa		13.95	□□□□□ -0.18
CLN3-244	ENST00000636147	ANKRD50	Q9ULJ7	1429 aa		13.95	□□□□□ -0.18
CLN3-244	ENST00000636147	PKNOX2	Q96KN3	472 aa		13.95	□□□□□ -0.18
CLN3-244	ENST00000636147	EFCAB5	A4FU69	1503 aa		13.95	□□□□□ -0.18
CLN3-244	ENST00000636147	PEG3	Q9GZU2	1588 aa		13.95	□□□□□ -0.18
CLN3-244	ENST00000636147	GBP4	Q96PP9	640 aa		13.95	□□□□□ -0.18
CLN3-244	ENST00000636147	SMC4	Q9NTJ3	1288 aa		13.94	□□□□□ -0.18
CLN3-244	ENST00000636147	KIAA1107	Q9UPP5	1409 aa		13.94	□□□□□ -0.18
CLN3-244	ENST00000636147	GAPVD1	Q14C86	1478 aa		13.94	□□□□□ -0.18
CLN3-244	ENST00000636147	TRAK2	O60296	914 aa		13.94	□□□□□ -0.18
CLN3-244	ENST00000636147	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.93	□□□□□ -0.18
CLN3-244	ENST00000636147	CHMP5	Q9NZZ3	219 aa		13.93	□□□□□ -0.18
CLN3-244	ENST00000636147	DAPK1	P53355	1430 aa		13.92	□□□□□ -0.18
CLN3-244	ENST00000636147	PDS5B	Q9NTI5	1447 aa		13.92	□□□□□ -0.18
CLN3-244	ENST00000636147	CDK13	Q14004	1512 aa	Known RBP	13.92	□□□□□ -0.18
CLN3-244	ENST00000636147	EHBP1L1	Q8N3D4	1523 aa		13.92	□□□□□ -0.18
CLN3-244	ENST00000636147	C8orf34	Q49A92	452 aa		13.92	□□□□□ -0.18
CLN3-244	ENST00000636147	APBB1	O00213	710 aa		13.91	□□□□□ -0.18
CLN3-244	ENST00000636147	C22orf23	Q9BZE7	217 aa		13.91	□□□□□ -0.18
CLN3-244	ENST00000636147	PDZRN3	Q9UPQ7	1066 aa		13.91	□□□□□ -0.18
CLN3-244	ENST00000636147	PLCB2	Q00722	1185 aa		13.9	□□□□□ -0.18
CLN3-244	ENST00000636147	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.9	□□□□□ -0.18
CLN3-244	ENST00000636147	DUSP27	Q5VZP5	1158 aa		13.9	□□□□□ -0.18
CLN3-244	ENST00000636147	POLA1	P09884	1462 aa	Predicted RBP	13.89	□□□□□ -0.19
CLN3-244	ENST00000636147	IGHD	P01880	384 aa		13.89	□□□□□ -0.19
CLN3-244	ENST00000636147	DDX11L8	A8MPP1	907 aa		13.89	□□□□□ -0.19
CLN3-244	ENST00000636147	DDX49	Q9Y6V7	483 aa	Known RBP	13.88	□□□□□ -0.19
CLN3-244	ENST00000636147	MCM4	P33991	863 aa		13.88	□□□□□ -0.19
CLN3-244	ENST00000636147	PANK2	Q9BZ23	570 aa		13.88	□□□□□ -0.19
CLN3-244	ENST00000636147	ABCC5	O15440	1437 aa		13.87	□□□□□ -0.19
CLN3-244	ENST00000636147	SEC24B	O95487	1268 aa		13.87	□□□□□ -0.19
CLN3-244	ENST00000636147	MRE11	P49959	708 aa		13.87	□□□□□ -0.19
CLN3-244	ENST00000636147	SLFN5	Q08AF3	891 aa		13.87	□□□□□ -0.19
CLN3-244	ENST00000636147	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.87	□□□□□ -0.19
CLN3-244	ENST00000636147	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.87	□□□□□ -0.19
CLN3-244	ENST00000636147	PLEKHG5	O94827	1062 aa		13.86	□□□□□ -0.19
CLN3-244	ENST00000636147	PRG4	Q92954	1404 aa	Predicted RBP	13.86	□□□□□ -0.19
CLN3-244	ENST00000636147	LNPK	Q9C0E8	428 aa		13.86	□□□□□ -0.19
CLN3-244	ENST00000636147	FAM13B	Q9NYF5	915 aa		13.86	□□□□□ -0.19
CLN3-244	ENST00000636147	NES	P48681	1621 aa		13.85	□□□□□ -0.19
CLN3-244	ENST00000636147	TBC1D2	Q9BYX2	928 aa		13.85	□□□□□ -0.19
CLN3-244	ENST00000636147	ZKSCAN2	Q63HK3	967 aa		13.84	□□□□□ -0.19
CLN3-244	ENST00000636147	RRAGD	Q9NQL2	400 aa	Predicted RBP	13.84	□□□□□ -0.19
CLN3-244	ENST00000636147	EPRS	P07814	1512 aa	Known RBP	13.84	□□□□□ -0.19
CLN3-244	ENST00000636147	CALD1	Q05682	793 aa	Known RBP	13.84	□□□□□ -0.19
CLN3-244	ENST00000636147	ELL2	O00472	640 aa	Predicted RBP	13.83	□□□□□ -0.2
CLN3-244	ENST00000636147	JPH4	Q96JJ6	628 aa		13.83	□□□□□ -0.2
CLN3-244	ENST00000636147	TRAK1	Q9UPV9	953 aa		13.83	□□□□□ -0.2
CLN3-244	ENST00000636147	ESPN	B1AK53	854 aa		13.83	□□□□□ -0.2
CLN3-244	ENST00000636147	PDE3A	Q14432	1141 aa		13.83	□□□□□ -0.2
CLN3-244	ENST00000636147	ANKRD45	Q5TZF3	282 aa		13.83	□□□□□ -0.2
CLN3-244	ENST00000636147	XRCC6	P12956	609 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
CLN3-244	ENST00000636147	DZIP1L	Q8IYY4	767 aa	Known RBP	13.82	□□□□□ -0.2
CLN3-244	ENST00000636147	TCP11L2	Q8N4U5	519 aa		13.82	□□□□□ -0.2
CLN3-244	ENST00000636147	RBM10	P98175	930 aa	Known RBP	13.82	□□□□□ -0.2
CLN3-244	ENST00000636147	GRPEL1	Q9HAV7	217 aa		13.82	□□□□□ -0.2
CLN3-244	ENST00000636147	ROCK1	Q13464	1354 aa		13.82	□□□□□ -0.2
CLN3-244	ENST00000636147	TOPBP1	Q92547	1522 aa		13.81	□□□□□ -0.2
CLN3-244	ENST00000636147	LRPPRC	P42704	1394 aa	Known RBP	13.81	□□□□□ -0.2
CLN3-244	ENST00000636147	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.8	□□□□□ -0.2
CLN3-244	ENST00000636147	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.8	□□□□□ -0.2
CLN3-244	ENST00000636147	IPO8	O15397	1037 aa	Known RBP	13.8	□□□□□ -0.2
CLN3-244	ENST00000636147	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.8	□□□□□ -0.2
CLN3-244	ENST00000636147	PRDM2	Q13029	1718 aa		13.79	□□□□□ -0.2
CLN3-244	ENST00000636147	SPATA31E1	Q6ZUB1	1445 aa		13.79	□□□□□ -0.2
CLN3-244	ENST00000636147	NOL8	Q76FK4	1167 aa	Known RBP	13.79	□□□□□ -0.2
CLN3-244	ENST00000636147	HMGXB3	Q12766	1538 aa		13.79	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms