RNA–Protein interactions for RNA: ENST00000588972.1

ATG4D-210, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 632 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-210ENST00000588972 ATN1P54259 1190 aaPredicted RBP13.46□□□□□ -0.25
ATG4D-210ENST00000588972 IRF6O14896 467 aa13.45□□□□□ -0.26
ATG4D-210ENST00000588972 OSBPP22059 807 aa13.45□□□□□ -0.26
ATG4D-210ENST00000588972 ZMYND15Q9H091 742 aa13.45□□□□□ -0.26
ATG4D-210ENST00000588972 WDR97A6NE52 1622 aa13.45□□□□□ -0.26
ATG4D-210ENST00000588972 OCEL1Q9H607 264 aa13.44□□□□□ -0.26
ATG4D-210ENST00000588972 AMHR2Q16671 573 aa13.43□□□□□ -0.26
ATG4D-210ENST00000588972 CLASP1Q7Z460 1538 aa13.43□□□□□ -0.26
ATG4D-210ENST00000588972 PLEKHG3A1L390 1219 aa13.42□□□□□ -0.26
ATG4D-210ENST00000588972 ZNF316A6NFI3 1004 aaPredicted RBP13.42□□□□□ -0.26
ATG4D-210ENST00000588972 GNPATO15228 680 aa13.42□□□□□ -0.26
ATG4D-210ENST00000588972 G3V3G9 751 aa13.41□□□□□ -0.26
ATG4D-210ENST00000588972 PTGER2P43116 358 aa13.41□□□□□ -0.26
ATG4D-210ENST00000588972 UPF1Q92900 1129 aaKnown RBP eCLIP13.41□□□□□ -0.263e-7■□□□□ 9.9
ATG4D-210ENST00000588972 SNAPC4Q5SXM2 1469 aa13.41□□□□□ -0.26
ATG4D-210ENST00000588972 RAD54L2Q9Y4B4 1467 aa13.41□□□□□ -0.26
ATG4D-210ENST00000588972 SYNJ1O43426 1573 aa13.41□□□□□ -0.26
ATG4D-210ENST00000588972 IER5LQ5T953 404 aa13.4□□□□□ -0.26
ATG4D-210ENST00000588972 PARP9Q8IXQ6 854 aa13.4□□□□□ -0.26
ATG4D-210ENST00000588972 OXER1Q8TDS5 423 aa13.4□□□□□ -0.26
ATG4D-210ENST00000588972 DDRGK1Q96HY6 314 aa13.39□□□□□ -0.27
ATG4D-210ENST00000588972 SOGA1O94964 1423 aa13.39□□□□□ -0.27
ATG4D-210ENST00000588972 MAGI1Q96QZ7 1491 aaPredicted RBP13.38□□□□□ -0.27
ATG4D-210ENST00000588972 TDRD9Q8NDG6 1382 aaKnown RBP13.38□□□□□ -0.27
ATG4D-210ENST00000588972 ATMINO43313 823 aaPredicted RBP13.38□□□□□ -0.27
ATG4D-210ENST00000588972 FCHSD2O94868 740 aa13.38□□□□□ -0.27
ATG4D-210ENST00000588972 FECHP22830 423 aa13.38□□□□□ -0.27
ATG4D-210ENST00000588972 HIC1Q14526 733 aa13.38□□□□□ -0.27
ATG4D-210ENST00000588972 DDX12PQ92771 950 aa13.37□□□□□ -0.27
ATG4D-210ENST00000588972 RSPH6AQ9H0K4 717 aa13.37□□□□□ -0.27
ATG4D-210ENST00000588972 FGD5Q6ZNL6 1462 aa13.36□□□□□ -0.27
ATG4D-210ENST00000588972 CLCN6P51797 869 aa13.36□□□□□ -0.27
ATG4D-210ENST00000588972 ASTLQ6HA08 431 aaPredicted RBP13.35□□□□□ -0.27
ATG4D-210ENST00000588972 TMEM92Q6UXU6 159 aa13.35□□□□□ -0.27
ATG4D-210ENST00000588972 SYNJ2O15056 1496 aa13.34□□□□□ -0.27
ATG4D-210ENST00000588972 GRIN2BQ13224 1484 aa13.34□□□□□ -0.27
ATG4D-210ENST00000588972 PRIM1P49642 420 aaKnown RBP13.33□□□□□ -0.28
ATG4D-210ENST00000588972 PLCG2P16885 1265 aa13.32□□□□□ -0.28
ATG4D-210ENST00000588972 CHMP7Q8WUX9 453 aaPredicted RBP13.32□□□□□ -0.28
ATG4D-210ENST00000588972 CUX1P39880 1505 aa13.32□□□□□ -0.28
ATG4D-210ENST00000588972 L3MBTL3Q96JM7 780 aaPredicted RBP13.31□□□□□ -0.28
ATG4D-210ENST00000588972 TBC1D12O60347 775 aa13.3□□□□□ -0.28
ATG4D-210ENST00000588972 PTGDRQ13258 359 aa13.3□□□□□ -0.28
ATG4D-210ENST00000588972 PBRM1Q86U86 1689 aa13.3□□□□□ -0.28
ATG4D-210ENST00000588972 EVI5O60447 810 aa13.29□□□□□ -0.28
ATG4D-210ENST00000588972 EVX2Q03828 476 aa13.28□□□□□ -0.28
ATG4D-210ENST00000588972 GAPVD1Q14C86 1478 aa13.28□□□□□ -0.28
ATG4D-210ENST00000588972 TTLL12Q14166 644 aaPredicted RBP13.27□□□□□ -0.29
ATG4D-210ENST00000588972 GOPCQ9HD26 462 aa13.26□□□□□ -0.29
ATG4D-210ENST00000588972 HAX1O00165 279 aa13.25□□□□□ -0.29
ATG4D-210ENST00000588972 UBTFP17480 764 aaKnown RBP13.25□□□□□ -0.29
ATG4D-210ENST00000588972 GIGYF2Q6Y7W6 1299 aaKnown RBP13.24□□□□□ -0.29
ATG4D-210ENST00000588972 ABCA5Q8WWZ7 1642 aa13.24□□□□□ -0.29
ATG4D-210ENST00000588972 FLIIQ13045 1269 aa13.22□□□□□ -0.29
ATG4D-210ENST00000588972 MS4A1P11836 297 aa13.21□□□□□ -0.29
ATG4D-210ENST00000588972 ABCA10Q8WWZ4 1543 aa13.21□□□□□ -0.29
ATG4D-210ENST00000588972 PTCD2Q8WV60 388 aaKnown RBP13.2□□□□□ -0.3
ATG4D-210ENST00000588972 REPIN1Q9BWE0 567 aaKnown RBP13.2□□□□□ -0.3
ATG4D-210ENST00000588972 C1orf115Q9H7X2 142 aa13.2□□□□□ -0.3
ATG4D-210ENST00000588972 ONECUT3O60422 494 aaPredicted RBP13.19□□□□□ -0.3
ATG4D-210ENST00000588972 COLQQ9Y215 455 aaPredicted RBP13.19□□□□□ -0.3
ATG4D-210ENST00000588972 ANO8Q9HCE9 1232 aaPredicted RBP13.18□□□□□ -0.3
ATG4D-210ENST00000588972 GRIN2AQ12879 1464 aa13.17□□□□□ -0.3
ATG4D-210ENST00000588972 CDHR5Q9HBB8 845 aa13.17□□□□□ -0.3
ATG4D-210ENST00000588972 ADAMTS12P58397 1594 aa13.16□□□□□ -0.3
ATG4D-210ENST00000588972 SEC24BO95487 1268 aa13.16□□□□□ -0.3
ATG4D-210ENST00000588972 NPDC1Q9NQX5 325 aaPredicted RBP13.16□□□□□ -0.3
ATG4D-210ENST00000588972 ERCC6L2Q5T890 1561 aa13.15□□□□□ -0.3
ATG4D-210ENST00000588972 EN1Q05925 392 aaPredicted RBP13.15□□□□□ -0.3
ATG4D-210ENST00000588972 PCMTD1Q96MG8 357 aaPredicted RBP13.15□□□□□ -0.3
ATG4D-210ENST00000588972 TMUB1Q9BVT8 246 aa13.15□□□□□ -0.3
ATG4D-210ENST00000588972 CEP170Q5SW79 1584 aa13.15□□□□□ -0.3
ATG4D-210ENST00000588972 PELP1Q8IZL8 1130 aaKnown RBP13.14□□□□□ -0.31
ATG4D-210ENST00000588972 NUP160Q12769 1436 aa13.13□□□□□ -0.31
ATG4D-210ENST00000588972 SHROOM2Q13796 1616 aa13.13□□□□□ -0.31
ATG4D-210ENST00000588972 PHF14O94880 888 aa13.12□□□□□ -0.31
ATG4D-210ENST00000588972 SLC34A2O95436 690 aa13.12□□□□□ -0.31
ATG4D-210ENST00000588972 EPAS1Q99814 870 aa13.12□□□□□ -0.31
ATG4D-210ENST00000588972 ARID3AQ99856 593 aa13.12□□□□□ -0.31
ATG4D-210ENST00000588972 ARID3CA6NKF2 412 aa13.11□□□□□ -0.31
ATG4D-210ENST00000588972 SH3D19Q5HYK7 790 aa13.11□□□□□ -0.31
ATG4D-210ENST00000588972 MAP3K7O43318 606 aa13.1□□□□□ -0.31
ATG4D-210ENST00000588972 CLCN1P35523 988 aa13.1□□□□□ -0.31
ATG4D-210ENST00000588972 WRNQ14191 1432 aaPredicted RBP eCLIP13.1□□□□□ -0.31
ATG4D-210ENST00000588972 PHOX2BQ99453 314 aa13.09□□□□□ -0.31
ATG4D-210ENST00000588972 POTEFA5A3E0 1075 aa13.08□□□□□ -0.32
ATG4D-210ENST00000588972 APBB1O00213 710 aa13.08□□□□□ -0.32
ATG4D-210ENST00000588972 MDM2Q00987 491 aaPredicted RBP13.08□□□□□ -0.32
ATG4D-210ENST00000588972 GPCPD1Q9NPB8 672 aa13.08□□□□□ -0.32
ATG4D-210ENST00000588972 KIF13AQ9H1H9 1805 aa13.08□□□□□ -0.32
ATG4D-210ENST00000588972 FHAD1B1AJZ9 1412 aa13.07□□□□□ -0.32
ATG4D-210ENST00000588972 RBM33Q96EV2 1170 aaKnown RBP13.07□□□□□ -0.32
ATG4D-210ENST00000588972 PCDHGA10Q9Y5H3 936 aa13.07□□□□□ -0.32
ATG4D-210ENST00000588972 BIVM-ERCC5R4GMW8 1640 aa13.06□□□□□ -0.32
ATG4D-210ENST00000588972 A6NJR5 290 aa13.06□□□□□ -0.32
ATG4D-210ENST00000588972 TOP2BQ02880 1626 aa13.06□□□□□ -0.32
ATG4D-210ENST00000588972 ERICH3Q5RHP9 1530 aa13.05□□□□□ -0.32
ATG4D-210ENST00000588972 GABBR2O75899 941 aa13.05□□□□□ -0.32
ATG4D-210ENST00000588972 TSR1Q2NL82 804 aaKnown RBP13.05□□□□□ -0.32
ATG4D-210ENST00000588972 C3orf67Q6ZVT6 689 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms