RNA–Protein interactions for RNA: ENST00000580949.1

PTPRM-213, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-213ENST00000580949 ZNF608Q9ULD9 1512 aaPredicted RBP9.85□□□□□ -0.83
PTPRM-213ENST00000580949 ABCA5Q8WWZ7 1642 aa9.85□□□□□ -0.83
PTPRM-213ENST00000580949 RANGAP1P46060 587 aaPredicted RBP9.84□□□□□ -0.83
PTPRM-213ENST00000580949 CAMK2BQ13554 666 aa9.84□□□□□ -0.83
PTPRM-213ENST00000580949 CLIP1P30622 1438 aa9.83□□□□□ -0.84
PTPRM-213ENST00000580949 SLC34A2O95436 690 aa9.83□□□□□ -0.84
PTPRM-213ENST00000580949 E2F4Q16254 413 aa9.83□□□□□ -0.84
PTPRM-213ENST00000580949 HOXB3P14651 431 aaPredicted RBP9.82□□□□□ -0.84
PTPRM-213ENST00000580949 DOK7Q18PE1 504 aa9.82□□□□□ -0.84
PTPRM-213ENST00000580949 PPARGC1BQ86YN6 1023 aaKnown RBP9.79□□□□□ -0.84
PTPRM-213ENST00000580949 GRIN2BQ13224 1484 aa9.79□□□□□ -0.84
PTPRM-213ENST00000580949 RIMBP2O15034 1052 aa9.78□□□□□ -0.84
PTPRM-213ENST00000580949 P3H3Q8IVL6 736 aa9.78□□□□□ -0.84
PTPRM-213ENST00000580949 OXER1Q8TDS5 423 aa9.78□□□□□ -0.84
PTPRM-213ENST00000580949 PTCD2Q8WV60 388 aaKnown RBP9.78□□□□□ -0.84
PTPRM-213ENST00000580949 ZSWIM6Q9HCJ5 1215 aa9.78□□□□□ -0.84
PTPRM-213ENST00000580949 EMILIN3Q9NT22 766 aa9.77□□□□□ -0.85
PTPRM-213ENST00000580949 ARIH1Q9Y4X5 557 aaPredicted RBP9.77□□□□□ -0.85
PTPRM-213ENST00000580949 CUL7Q14999 1698 aa9.77□□□□□ -0.85
PTPRM-213ENST00000580949 FHAD1B1AJZ9 1412 aa9.76□□□□□ -0.85
PTPRM-213ENST00000580949 ZNF710Q8N1W2 664 aa9.76□□□□□ -0.85
PTPRM-213ENST00000580949 KCNV2Q8TDN2 545 aa9.76□□□□□ -0.85
PTPRM-213ENST00000580949 ARAP1Q96P48 1450 aa9.75□□□□□ -0.85
PTPRM-213ENST00000580949 ARHGAP35Q9NRY4 1499 aa9.74□□□□□ -0.85
PTPRM-213ENST00000580949 TBC1D12O60347 775 aa9.74□□□□□ -0.85
PTPRM-213ENST00000580949 UPF1Q92900 1129 aaKnown RBP eCLIP9.74□□□□□ -0.85
PTPRM-213ENST00000580949 PCGF6Q9BYE7 350 aa9.74□□□□□ -0.85
PTPRM-213ENST00000580949 PCDHGA4Q9Y5G9 962 aa9.74□□□□□ -0.85
PTPRM-213ENST00000580949 VPS8Q8N3P4 1428 aa9.73□□□□□ -0.85
PTPRM-213ENST00000580949 ARHGEF1Q92888 912 aaKnown RBP9.73□□□□□ -0.85
PTPRM-213ENST00000580949 SNAPC4Q5SXM2 1469 aa9.72□□□□□ -0.85
PTPRM-213ENST00000580949 EIF4G3O43432 1585 aaKnown RBP9.72□□□□□ -0.85
PTPRM-213ENST00000580949 ADAMTS12P58397 1594 aa9.72□□□□□ -0.85
PTPRM-213ENST00000580949 TRIM26Q12899 539 aaPredicted RBP9.72□□□□□ -0.85
PTPRM-213ENST00000580949 GPR153Q6NV75 609 aa9.72□□□□□ -0.85
PTPRM-213ENST00000580949 PBRM1Q86U86 1689 aa9.71□□□□□ -0.85
PTPRM-213ENST00000580949 MAP3K9P80192 1104 aa9.71□□□□□ -0.86
PTPRM-213ENST00000580949 DPYSL4O14531 572 aa9.7□□□□□ -0.86
PTPRM-213ENST00000580949 HOXB1P14653 301 aaPredicted RBP9.7□□□□□ -0.86
PTPRM-213ENST00000580949 ST18O60284 1047 aa9.69□□□□□ -0.86
PTPRM-213ENST00000580949 ARSIQ5FYB1 569 aa9.69□□□□□ -0.86
PTPRM-213ENST00000580949 FAM163AQ96GL9 167 aaPredicted RBP9.69□□□□□ -0.86
PTPRM-213ENST00000580949 MAGI1Q96QZ7 1491 aaPredicted RBP9.68□□□□□ -0.86
PTPRM-213ENST00000580949 CHMP7Q8WUX9 453 aaPredicted RBP9.68□□□□□ -0.86
PTPRM-213ENST00000580949 TTBK1Q5TCY1 1321 aaPredicted RBP9.67□□□□□ -0.86
PTPRM-213ENST00000580949 SPDYE16A6NNV3 312 aaPredicted RBP9.67□□□□□ -0.86
PTPRM-213ENST00000580949 GRIN2AQ12879 1464 aa9.66□□□□□ -0.86
PTPRM-213ENST00000580949 KDM4FA0A1W2PPD8 638 aa9.66□□□□□ -0.86
PTPRM-213ENST00000580949 PDIA6Q15084 440 aa9.66□□□□□ -0.86
PTPRM-213ENST00000580949 KHSRPQ92945 711 aaKnown RBP eCLIP9.66□□□□□ -0.86
PTPRM-213ENST00000580949 SYNJ2O15056 1496 aa9.66□□□□□ -0.86
PTPRM-213ENST00000580949 ZNF316A6NFI3 1004 aaPredicted RBP9.65□□□□□ -0.86
PTPRM-213ENST00000580949 EVI5O60447 810 aa9.65□□□□□ -0.86
PTPRM-213ENST00000580949 FHOD3Q2V2M9 1422 aa9.65□□□□□ -0.87
PTPRM-213ENST00000580949 NUDT7P0C024 238 aa9.64□□□□□ -0.87
PTPRM-213ENST00000580949 LCE2DQ5TA82 110 aaPredicted RBP9.64□□□□□ -0.87
PTPRM-213ENST00000580949 ANO8Q9HCE9 1232 aaPredicted RBP9.64□□□□□ -0.87
PTPRM-213ENST00000580949 KIAA0586Q9BVV6 1533 aa9.63□□□□□ -0.87
PTPRM-213ENST00000580949 KANK4Q5T7N3 995 aaPredicted RBP9.63□□□□□ -0.87
PTPRM-213ENST00000580949 EFCAB5A4FU69 1503 aa9.62□□□□□ -0.87
PTPRM-213ENST00000580949 CTTNBP2Q8WZ74 1663 aa9.62□□□□□ -0.87
PTPRM-213ENST00000580949 NUP160Q12769 1436 aa9.61□□□□□ -0.87
PTPRM-213ENST00000580949 IQGAP2Q13576 1575 aa9.6□□□□□ -0.87
PTPRM-213ENST00000580949 SAMD9Q5K651 1589 aa9.6□□□□□ -0.87
PTPRM-213ENST00000580949 CEP170Q5SW79 1584 aa9.6□□□□□ -0.87
PTPRM-213ENST00000580949 PTGER2P43116 358 aa9.59□□□□□ -0.87
PTPRM-213ENST00000580949 EMP3P54852 163 aa9.59□□□□□ -0.87
PTPRM-213ENST00000580949 UGGT2Q9NYU1 1516 aa9.59□□□□□ -0.87
PTPRM-213ENST00000580949 MARVELD3Q96A59 401 aa9.58□□□□□ -0.88
PTPRM-213ENST00000580949 JPH4Q96JJ6 628 aa9.58□□□□□ -0.88
PTPRM-213ENST00000580949 LHX6Q9UPM6 363 aa9.58□□□□□ -0.88
PTPRM-213ENST00000580949 CASKIN1Q8WXD9 1431 aa9.57□□□□□ -0.88
PTPRM-213ENST00000580949 DISP1Q96F81 1524 aa9.57□□□□□ -0.88
PTPRM-213ENST00000580949 PSDA5PKW4 1024 aaPredicted RBP9.57□□□□□ -0.88
PTPRM-213ENST00000580949 ATP1B4Q9UN42 357 aaPredicted RBP9.57□□□□□ -0.88
PTPRM-213ENST00000580949 FMN1Q68DA7 1419 aa9.56□□□□□ -0.88
PTPRM-213ENST00000580949 NBR1Q14596 966 aa9.56□□□□□ -0.88
PTPRM-213ENST00000580949 SEMA3EO15041 775 aa9.55□□□□□ -0.88
PTPRM-213ENST00000580949 ERBB3P21860 1342 aa9.55□□□□□ -0.88
PTPRM-213ENST00000580949 PCF11O94913 1555 aaKnown RBP9.54□□□□□ -0.88
PTPRM-213ENST00000580949 FYCO1Q9BQS8 1478 aa9.54□□□□□ -0.88
PTPRM-213ENST00000580949 TESPA1A2RU30 521 aaPredicted RBP9.54□□□□□ -0.88
PTPRM-213ENST00000580949 PHF14O94880 888 aa9.54□□□□□ -0.88
PTPRM-213ENST00000580949 FOSBP53539 338 aa9.54□□□□□ -0.88
PTPRM-213ENST00000580949 MAP3K1Q13233 1512 aa9.54□□□□□ -0.88
PTPRM-213ENST00000580949 FAM205CA6NFA0 338 aa9.52□□□□□ -0.89
PTPRM-213ENST00000580949 TIAM1Q13009 1591 aa9.52□□□□□ -0.89
PTPRM-213ENST00000580949 ZNF454Q8N9F8 522 aa9.52□□□□□ -0.89
PTPRM-213ENST00000580949 DDX12PQ92771 950 aa9.52□□□□□ -0.89
PTPRM-213ENST00000580949 EPAS1Q99814 870 aa9.52□□□□□ -0.89
PTPRM-213ENST00000580949 MLLT3P42568 568 aaPredicted RBP9.51□□□□□ -0.89
PTPRM-213ENST00000580949 PPP4R3BQ5MIZ7 849 aa9.51□□□□□ -0.89
PTPRM-213ENST00000580949 VARS2Q5ST30 1063 aaKnown RBP9.51□□□□□ -0.89
PTPRM-213ENST00000580949 BCANQ96GW7 911 aa9.51□□□□□ -0.89
PTPRM-213ENST00000580949 PCDHGA10Q9Y5H3 936 aa9.51□□□□□ -0.89
PTPRM-213ENST00000580949 KIAA0556O60303 1618 aa9.51□□□□□ -0.89
PTPRM-213ENST00000580949 LRRC9Q6ZRR7 1453 aa9.51□□□□□ -0.89
PTPRM-213ENST00000580949 GRXCR2A6NFK2 248 aa9.5□□□□□ -0.89
PTPRM-213ENST00000580949 SMYD5Q6GMV2 418 aa9.5□□□□□ -0.89
PTPRM-213ENST00000580949 TYW1BQ6NUM6 668 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms