RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	APBB1	O00213	710 aa		6.32	□□□□□ -1.4
SYNE2-223	ENST00000557005	FOXD4L5	Q5VV16	416 aa	Predicted RBP	6.32	□□□□□ -1.4
SYNE2-223	ENST00000557005	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	6.32	□□□□□ -1.4
SYNE2-223	ENST00000557005	FRAT2	O75474	233 aa	Predicted RBP	6.31	□□□□□ -1.4
SYNE2-223	ENST00000557005	BCL2L13	Q9BXK5	485 aa		6.31	□□□□□ -1.4
SYNE2-223	ENST00000557005	ZNF644	Q9H582	1327 aa	Predicted RBP	6.31	□□□□□ -1.4
SYNE2-223	ENST00000557005	SAFB2	Q14151	953 aa	Known RBP eCLIP	6.31	□□□□□ -1.4
SYNE2-223	ENST00000557005	NBPF8	Q3BBV2	869 aa		6.31	□□□□□ -1.4
SYNE2-223	ENST00000557005	CFAP43	Q8NDM7	1665 aa		6.31	□□□□□ -1.4
SYNE2-223	ENST00000557005	HECW1	Q76N89	1606 aa		6.3	□□□□□ -1.4
SYNE2-223	ENST00000557005	COG6	Q9Y2V7	657 aa		6.3	□□□□□ -1.4
SYNE2-223	ENST00000557005	EFCAB5	A4FU69	1503 aa		6.3	□□□□□ -1.4
SYNE2-223	ENST00000557005	C11orf95	C9JLR9	678 aa	Predicted RBP	6.3	□□□□□ -1.4
SYNE2-223	ENST00000557005	CADPS	Q9ULU8	1353 aa		6.3	□□□□□ -1.4
SYNE2-223	ENST00000557005	DDX11L8	A8MPP1	907 aa		6.29	□□□□□ -1.4
SYNE2-223	ENST00000557005	NOL8	Q76FK4	1167 aa	Known RBP	6.29	□□□□□ -1.4
SYNE2-223	ENST00000557005	SMC4	Q9NTJ3	1288 aa		6.29	□□□□□ -1.4
SYNE2-223	ENST00000557005	PTMS	P20962	102 aa		6.29	□□□□□ -1.4
SYNE2-223	ENST00000557005	HFM1	A2PYH4	1435 aa		6.29	□□□□□ -1.4
SYNE2-223	ENST00000557005	EIF3A	Q14152	1382 aa	Known RBP	6.29	□□□□□ -1.4
SYNE2-223	ENST00000557005	PLEKHG5	O94827	1062 aa		6.29	□□□□□ -1.4
SYNE2-223	ENST00000557005	BACH2	Q9BYV9	841 aa		6.29	□□□□□ -1.4
SYNE2-223	ENST00000557005	BRD4	O60885	1362 aa	Predicted RBP	6.28	□□□□□ -1.4
SYNE2-223	ENST00000557005	PANK1	Q8TE04	598 aa		6.28	□□□□□ -1.4
SYNE2-223	ENST00000557005	CCDC144A	A2RUR9	1427 aa		6.28	□□□□□ -1.4
SYNE2-223	ENST00000557005	ERCC6	Q03468	1493 aa		6.28	□□□□□ -1.4
SYNE2-223	ENST00000557005	NUTM2D	Q5VT03	806 aa	Predicted RBP	6.28	□□□□□ -1.4
SYNE2-223	ENST00000557005	FAM43A	Q8N2R8	423 aa		6.28	□□□□□ -1.4
SYNE2-223	ENST00000557005	TAOK2	Q9UL54	1235 aa		6.28	□□□□□ -1.4
SYNE2-223	ENST00000557005	DRC7	Q8IY82	874 aa		6.28	□□□□□ -1.4
SYNE2-223	ENST00000557005	CDK13	Q14004	1512 aa	Known RBP	6.27	□□□□□ -1.41
SYNE2-223	ENST00000557005	KANK1	Q14678	1352 aa		6.27	□□□□□ -1.41
SYNE2-223	ENST00000557005	U2AF1L5	P0DN76	240 aa	Predicted RBP	6.27	□□□□□ -1.41
SYNE2-223	ENST00000557005	U2AF1	Q01081	240 aa	Known RBP eCLIP	6.27	□□□□□ -1.41
SYNE2-223	ENST00000557005	DAPK1	P53355	1430 aa		6.26	□□□□□ -1.41
SYNE2-223	ENST00000557005		E9PSI1	815 aa		6.26	□□□□□ -1.41
SYNE2-223	ENST00000557005	PKNOX2	Q96KN3	472 aa		6.26	□□□□□ -1.41
SYNE2-223	ENST00000557005	ADAMTS8	Q9UP79	889 aa		6.26	□□□□□ -1.41
SYNE2-223	ENST00000557005	CC2D2A	Q9P2K1	1620 aa		6.26	□□□□□ -1.41
SYNE2-223	ENST00000557005	SRPK2	P78362	688 aa	Known RBP	6.26	□□□□□ -1.41
SYNE2-223	ENST00000557005	STK26	Q9P289	416 aa		6.26	□□□□□ -1.41
SYNE2-223	ENST00000557005	GAPVD1	Q14C86	1478 aa		6.26	□□□□□ -1.41
SYNE2-223	ENST00000557005	APAF1	O14727	1248 aa		6.25	□□□□□ -1.41
SYNE2-223	ENST00000557005	CTTNBP2	Q8WZ74	1663 aa		6.25	□□□□□ -1.41
SYNE2-223	ENST00000557005	POGK	Q9P215	609 aa		6.25	□□□□□ -1.41
SYNE2-223	ENST00000557005	NAIP	Q13075	1403 aa		6.25	□□□□□ -1.41
SYNE2-223	ENST00000557005	CHAF1A	Q13111	956 aa	Predicted RBP	6.25	□□□□□ -1.41
SYNE2-223	ENST00000557005	BCAR3	O75815	825 aa		6.24	□□□□□ -1.41
SYNE2-223	ENST00000557005	C20orf194	Q5TEA3	1177 aa		6.24	□□□□□ -1.41
SYNE2-223	ENST00000557005	NCOA1	Q15788	1441 aa		6.24	□□□□□ -1.41
SYNE2-223	ENST00000557005	MCC	P23508	829 aa		6.24	□□□□□ -1.41
SYNE2-223	ENST00000557005	MIA2	Q96PC5	1412 aa		6.24	□□□□□ -1.41
SYNE2-223	ENST00000557005	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	6.24	□□□□□ -1.41
SYNE2-223	ENST00000557005	FOXD4L3	Q6VB84	417 aa	Predicted RBP	6.24	□□□□□ -1.41
SYNE2-223	ENST00000557005	PNISR	Q8TF01	805 aa	Known RBP	6.24	□□□□□ -1.41
SYNE2-223	ENST00000557005	NES	P48681	1621 aa		6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	RBM10	P98175	930 aa	Known RBP	6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	ANKRD45	Q5TZF3	282 aa		6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	MCTP1	Q6DN14	999 aa		6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	CUL7	Q14999	1698 aa		6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	C14orf37	Q86TY3	774 aa		6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	MAP3K1	Q13233	1512 aa		6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	IPO8	O15397	1037 aa	Known RBP	6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	OS9	Q13438	667 aa	Predicted RBP	6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	CDK11B	P21127	795 aa	Known RBP	6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	CHMP4B	Q9H444	224 aa	Known RBP	6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	FAM13B	Q9NYF5	915 aa		6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	CARMIL2	Q6F5E8	1435 aa		6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	CALD1	Q05682	793 aa	Known RBP	6.23	□□□□□ -1.41
SYNE2-223	ENST00000557005	C22orf23	Q9BZE7	217 aa		6.22	□□□□□ -1.41
SYNE2-223	ENST00000557005	KIAA1107	Q9UPP5	1409 aa		6.22	□□□□□ -1.41
SYNE2-223	ENST00000557005	SOX12	O15370	315 aa		6.22	□□□□□ -1.41
SYNE2-223	ENST00000557005	PPP2R1A	P30153	589 aa		6.22	□□□□□ -1.41
SYNE2-223	ENST00000557005	DDX49	Q9Y6V7	483 aa	Known RBP	6.22	□□□□□ -1.41
SYNE2-223	ENST00000557005	CHMP5	Q9NZZ3	219 aa		6.22	□□□□□ -1.41
SYNE2-223	ENST00000557005	PDS5B	Q9NTI5	1447 aa		6.22	□□□□□ -1.41
SYNE2-223	ENST00000557005	TRAK2	O60296	914 aa		6.22	□□□□□ -1.41
SYNE2-223	ENST00000557005	SKOR2	Q2VWA4	1001 aa	Predicted RBP	6.22	□□□□□ -1.41
SYNE2-223	ENST00000557005	PTPRK	Q15262	1439 aa		6.22	□□□□□ -1.41
SYNE2-223	ENST00000557005	ERBIN	Q96RT1	1412 aa		6.22	□□□□□ -1.41
SYNE2-223	ENST00000557005	KIAA2012	Q0VF49	1180 aa		6.21	□□□□□ -1.41
SYNE2-223	ENST00000557005	ZKSCAN2	Q63HK3	967 aa		6.21	□□□□□ -1.41
SYNE2-223	ENST00000557005	NAP1L2	Q9ULW6	460 aa	Predicted RBP	6.21	□□□□□ -1.41
SYNE2-223	ENST00000557005	PDZRN3	Q9UPQ7	1066 aa		6.21	□□□□□ -1.41
SYNE2-223	ENST00000557005	AQR	O60306	1485 aa	Known RBP eCLIP	6.21	□□□□□ -1.41
SYNE2-223	ENST00000557005	BICRA	Q9NZM4	1560 aa		6.21	□□□□□ -1.41
SYNE2-223	ENST00000557005	GOLGA6L6	A8MZA4	724 aa		6.21	□□□□□ -1.42
SYNE2-223	ENST00000557005	R3HCC1	Q9Y3T6	440 aa	Known RBP	6.21	□□□□□ -1.42
SYNE2-223	ENST00000557005	BCL11B	Q9C0K0	894 aa	Predicted RBP	6.21	□□□□□ -1.42
SYNE2-223	ENST00000557005	ESF1	Q9H501	851 aa	Known RBP	6.21	□□□□□ -1.42
SYNE2-223	ENST00000557005	CGNL1	Q0VF96	1302 aa		6.2	□□□□□ -1.42
SYNE2-223	ENST00000557005	CAMSAP2	Q08AD1	1489 aa		6.2	□□□□□ -1.42
SYNE2-223	ENST00000557005	TRIM6-TRIM34	B2RNG4	842 aa		6.2	□□□□□ -1.42
SYNE2-223	ENST00000557005	ZRSR1	Q15695	479 aa	Known RBP	6.2	□□□□□ -1.42
SYNE2-223	ENST00000557005	NBPF1	Q3BBV0	1214 aa		6.2	□□□□□ -1.42
SYNE2-223	ENST00000557005	TRAK1	Q9UPV9	953 aa		6.2	□□□□□ -1.42
SYNE2-223	ENST00000557005	ANKRD50	Q9ULJ7	1429 aa		6.2	□□□□□ -1.42
SYNE2-223	ENST00000557005	DNMBP	Q6XZF7	1577 aa		6.2	□□□□□ -1.42
SYNE2-223	ENST00000557005	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	6.19	□□□□□ -1.42
SYNE2-223	ENST00000557005	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	6.19	□□□□□ -1.42

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