RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-217	ENST00000555022	BRD4	O60885	1362 aa	Predicted RBP	11.49	□□□□□ -0.57
SYNE2-217	ENST00000555022	CENPQ	Q7L2Z9	268 aa	Predicted RBP	11.49	□□□□□ -0.57
SYNE2-217	ENST00000555022	EFCAB5	A4FU69	1503 aa		11.49	□□□□□ -0.57
SYNE2-217	ENST00000555022	FANCD2	Q9BXW9	1451 aa		11.48	□□□□□ -0.57
SYNE2-217	ENST00000555022	FAM43A	Q8N2R8	423 aa		11.48	□□□□□ -0.57
SYNE2-217	ENST00000555022	APAF1	O14727	1248 aa		11.48	□□□□□ -0.57
SYNE2-217	ENST00000555022	PNN	Q9H307	717 aa	Known RBP	11.48	□□□□□ -0.57
SYNE2-217	ENST00000555022	DMRT2	Q9Y5R5	561 aa		11.48	□□□□□ -0.57
SYNE2-217	ENST00000555022	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.47	□□□□□ -0.57
SYNE2-217	ENST00000555022	LRPPRC	P42704	1394 aa	Known RBP	11.47	□□□□□ -0.57
SYNE2-217	ENST00000555022	POLA1	P09884	1462 aa	Predicted RBP	11.47	□□□□□ -0.57
SYNE2-217	ENST00000555022	ZMYND15	Q9H091	742 aa		11.47	□□□□□ -0.57
SYNE2-217	ENST00000555022	ABCC5	O15440	1437 aa		11.46	□□□□□ -0.57
SYNE2-217	ENST00000555022	DAPK1	P53355	1430 aa		11.46	□□□□□ -0.57
SYNE2-217	ENST00000555022	PLEKHH1	Q9ULM0	1364 aa		11.46	□□□□□ -0.58
SYNE2-217	ENST00000555022	PDS5B	Q9NTI5	1447 aa		11.46	□□□□□ -0.58
SYNE2-217	ENST00000555022	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.45	□□□□□ -0.58
SYNE2-217	ENST00000555022	MFAP1	P55081	439 aa	Known RBP	11.45	□□□□□ -0.58
SYNE2-217	ENST00000555022	KDM2B	Q8NHM5	1336 aa		11.45	□□□□□ -0.58
SYNE2-217	ENST00000555022	GRIN2B	Q13224	1484 aa		11.45	□□□□□ -0.58
SYNE2-217	ENST00000555022	UGGT2	Q9NYU1	1516 aa		11.44	□□□□□ -0.58
SYNE2-217	ENST00000555022	GOLGA2	Q08379	1002 aa		11.44	□□□□□ -0.58
SYNE2-217	ENST00000555022	PDE3B	Q13370	1112 aa		11.44	□□□□□ -0.58
SYNE2-217	ENST00000555022	LRRIQ1	Q96JM4	1722 aa		11.44	□□□□□ -0.58
SYNE2-217	ENST00000555022	THOC2	Q8NI27	1593 aa	Known RBP	11.44	□□□□□ -0.58
SYNE2-217	ENST00000555022	XRCC6	P12956	609 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
SYNE2-217	ENST00000555022	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.44	□□□□□ -0.58
SYNE2-217	ENST00000555022	DUSP27	Q5VZP5	1158 aa		11.44	□□□□□ -0.58
SYNE2-217	ENST00000555022	EHBP1L1	Q8N3D4	1523 aa		11.43	□□□□□ -0.58
SYNE2-217	ENST00000555022	DISP3	Q9P2K9	1392 aa		11.43	□□□□□ -0.58
SYNE2-217	ENST00000555022	HECW1	Q76N89	1606 aa		11.43	□□□□□ -0.58
SYNE2-217	ENST00000555022	GOLGA6L3	A6NEY3	463 aa		11.43	□□□□□ -0.58
SYNE2-217	ENST00000555022	MIA2	Q96PC5	1412 aa		11.42	□□□□□ -0.58
SYNE2-217	ENST00000555022	KNSTRN	Q9Y448	316 aa		11.42	□□□□□ -0.58
SYNE2-217	ENST00000555022	HSP90AA1	P07900	732 aa	Known RBP	11.42	□□□□□ -0.58
SYNE2-217	ENST00000555022	BECN1	Q14457	450 aa		11.42	□□□□□ -0.58
SYNE2-217	ENST00000555022	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	11.42	□□□□□ -0.58
SYNE2-217	ENST00000555022	PRG4	Q92954	1404 aa	Predicted RBP	11.41	□□□□□ -0.58
SYNE2-217	ENST00000555022	PZP	P20742	1482 aa		11.4	□□□□□ -0.58
SYNE2-217	ENST00000555022	EPRS	P07814	1512 aa	Known RBP	11.4	□□□□□ -0.58
SYNE2-217	ENST00000555022	KIAA1107	Q9UPP5	1409 aa		11.39	□□□□□ -0.59
SYNE2-217	ENST00000555022	PER1	O15534	1290 aa	Predicted RBP	11.39	□□□□□ -0.59
SYNE2-217	ENST00000555022	TPRN	Q4KMQ1	711 aa		11.39	□□□□□ -0.59
SYNE2-217	ENST00000555022	TBC1D2	Q9BYX2	928 aa		11.39	□□□□□ -0.59
SYNE2-217	ENST00000555022	USP19	O94966	1318 aa		11.39	□□□□□ -0.59
SYNE2-217	ENST00000555022	RBM10	P98175	930 aa	Known RBP	11.39	□□□□□ -0.59
SYNE2-217	ENST00000555022	PPP2R1A	P30153	589 aa		11.39	□□□□□ -0.59
SYNE2-217	ENST00000555022	UPF2	Q9HAU5	1272 aa	Known RBP	11.39	□□□□□ -0.59
SYNE2-217	ENST00000555022	TOPBP1	Q92547	1522 aa		11.38	□□□□□ -0.59
SYNE2-217	ENST00000555022	GLIPR1L2	Q4G1C9	344 aa		11.38	□□□□□ -0.59
SYNE2-217	ENST00000555022	ERCC6	Q03468	1493 aa		11.38	□□□□□ -0.59
SYNE2-217	ENST00000555022	TSPY4	P0CV99	314 aa		11.37	□□□□□ -0.59
SYNE2-217	ENST00000555022	TSPY10	P0CW01	314 aa		11.37	□□□□□ -0.59
SYNE2-217	ENST00000555022	L1TD1	Q5T7N2	865 aa	Known RBP	11.36	□□□□□ -0.59
SYNE2-217	ENST00000555022	PRDM2	Q13029	1718 aa		11.36	□□□□□ -0.59
SYNE2-217	ENST00000555022	GAPVD1	Q14C86	1478 aa		11.36	□□□□□ -0.59
SYNE2-217	ENST00000555022	PARD3	Q8TEW0	1356 aa		11.36	□□□□□ -0.59
SYNE2-217	ENST00000555022	TMF1	P82094	1093 aa		11.35	□□□□□ -0.59
SYNE2-217	ENST00000555022	PDZRN3	Q9UPQ7	1066 aa		11.35	□□□□□ -0.59
SYNE2-217	ENST00000555022	TRAK2	O60296	914 aa		11.35	□□□□□ -0.59
SYNE2-217	ENST00000555022	ANKRD50	Q9ULJ7	1429 aa		11.35	□□□□□ -0.59
SYNE2-217	ENST00000555022	ERBB4	Q15303	1308 aa		11.35	□□□□□ -0.59
SYNE2-217	ENST00000555022	RLBP1	P12271	317 aa		11.34	□□□□□ -0.59
SYNE2-217	ENST00000555022	PCDHB15	Q9Y5E8	787 aa		11.34	□□□□□ -0.59
SYNE2-217	ENST00000555022	GCC2	Q8IWJ2	1684 aa		11.34	□□□□□ -0.59
SYNE2-217	ENST00000555022	NCL	P19338	710 aa	Known RBP	11.34	□□□□□ -0.59
SYNE2-217	ENST00000555022	TRIM44	Q96DX7	344 aa	Predicted RBP	11.34	□□□□□ -0.59
SYNE2-217	ENST00000555022	KDM5C	P41229	1560 aa		11.34	□□□□□ -0.59
SYNE2-217	ENST00000555022	SLFN5	Q08AF3	891 aa		11.33	□□□□□ -0.6
SYNE2-217	ENST00000555022	CENPJ	Q9HC77	1338 aa	Predicted RBP	11.33	□□□□□ -0.6
SYNE2-217	ENST00000555022	MCM4	P33991	863 aa		11.33	□□□□□ -0.6
SYNE2-217	ENST00000555022	ABCA10	Q8WWZ4	1543 aa		11.33	□□□□□ -0.6
SYNE2-217	ENST00000555022	MPND	Q8N594	471 aa		11.33	□□□□□ -0.6
SYNE2-217	ENST00000555022	TCOF1	Q13428	1488 aa	Known RBP	11.32	□□□□□ -0.6
SYNE2-217	ENST00000555022	SLC24A1	O60721	1099 aa		11.32	□□□□□ -0.6
SYNE2-217	ENST00000555022	MYH16	Q9H6N6	1097 aa		11.32	□□□□□ -0.6
SYNE2-217	ENST00000555022	CTTNBP2	Q8WZ74	1663 aa		11.32	□□□□□ -0.6
SYNE2-217	ENST00000555022	ANKRD30A	Q9BXX3	1397 aa		11.32	□□□□□ -0.6
SYNE2-217	ENST00000555022		A0A0U1RQG5	324 aa	Predicted RBP	11.32	□□□□□ -0.6
SYNE2-217	ENST00000555022	KIAA0586	Q9BVV6	1533 aa		11.31	□□□□□ -0.6
SYNE2-217	ENST00000555022	TESK2	Q96S53	571 aa		11.31	□□□□□ -0.6
SYNE2-217	ENST00000555022	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.3	□□□□□ -0.6
SYNE2-217	ENST00000555022	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.3	□□□□□ -0.6
SYNE2-217	ENST00000555022	ABCA5	Q8WWZ7	1642 aa		11.29	□□□□□ -0.6
SYNE2-217	ENST00000555022	CAMSAP2	Q08AD1	1489 aa		11.29	□□□□□ -0.6
SYNE2-217	ENST00000555022	RALGAPB	Q86X10	1494 aa		11.29	□□□□□ -0.6
SYNE2-217	ENST00000555022	GAS2L3	Q86XJ1	694 aa		11.28	□□□□□ -0.6
SYNE2-217	ENST00000555022	MBD5	Q9P267	1494 aa		11.28	□□□□□ -0.6
SYNE2-217	ENST00000555022	ESPN	B1AK53	854 aa		11.28	□□□□□ -0.6
SYNE2-217	ENST00000555022	TSR2	Q969E8	191 aa	Known RBP	11.28	□□□□□ -0.6
SYNE2-217	ENST00000555022	ANTXR1	Q9H6X2	564 aa		11.28	□□□□□ -0.6
SYNE2-217	ENST00000555022	GRPEL1	Q9HAV7	217 aa		11.28	□□□□□ -0.6
SYNE2-217	ENST00000555022	FAM13B	Q9NYF5	915 aa		11.28	□□□□□ -0.6
SYNE2-217	ENST00000555022	PLEKHG5	O94827	1062 aa		11.28	□□□□□ -0.6
SYNE2-217	ENST00000555022	HSP90AB1	P08238	724 aa	Known RBP	11.28	□□□□□ -0.6
SYNE2-217	ENST00000555022	C22orf23	Q9BZE7	217 aa		11.28	□□□□□ -0.6
SYNE2-217	ENST00000555022	FTSJ3	Q8IY81	847 aa	Known RBP	11.27	□□□□□ -0.6
SYNE2-217	ENST00000555022	PRDM10	Q9NQV6	1147 aa		11.27	□□□□□ -0.6
SYNE2-217	ENST00000555022	ROCK1	Q13464	1354 aa		11.27	□□□□□ -0.6
SYNE2-217	ENST00000555022	CHGA	P10645	457 aa	Known RBP	11.27	□□□□□ -0.61

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